PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.12G075600.4.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HD-ZIP
Protein Properties Length: 728aa    MW: 79887.4 Da    PI: 6.006
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.12G075600.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.41.6e-2059114156
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  Manes.12G075600.4.p  59 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 114
                          688999***********************************************999 PP
2START225.41.7e-702484681206
                          HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.... CS
                START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla.... 77 
                          ela +a++el+++a+ +ep+W++s       +n+de++++f+++ +     ++ ea+r+++vv+m++ +lve l+d++ qW++ +     
  Manes.12G075600.4.p 248 ELAVAAMEELIRMAQMGEPLWMSSLdgtnAVLNEDEYIRIFPRGIGpkpsgFKCEASRETAVVIMNHINLVEYLMDVN-QWSTVFSgivs 336
                          57899********************9998899***********999********************************.*********** PP

                          EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTC CS
                START  78 kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksng 160
                          +a+tlev+s+g      galq+m+ae+q+++plvp R+++fvRy++q+ +g+w++vdvS+d+ ++ p     +R++++pSg+li++++ng
  Manes.12G075600.4.p 337 RAMTLEVLSTGvagnynGALQVMTAEFQLPTPLVPtRESYFVRYCKQHAEGTWAVVDVSLDNLRPSPA----ARCRRRPSGCLIQEMPNG 422
                          *****************************************************************995....****************** PP

                          EEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                START 161 hskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                          +skvtwveh+++++r +h+l+++lv+sg+a+gak+wvatl+rqce+
  Manes.12G075600.4.p 423 YSKVTWVEHIEVDDRGVHNLYKQLVSSGHAFGAKRWVATLDRQCER 468
                          ********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-2237114IPR009057Homeodomain-like
SuperFamilySSF466899.61E-2045116IPR009057Homeodomain-like
PROSITE profilePS5007116.95756116IPR001356Homeobox domain
SMARTSM003894.8E-2057120IPR001356Homeobox domain
PfamPF000464.1E-1859114IPR001356Homeobox domain
CDDcd000862.47E-1959117No hitNo description
PROSITE patternPS00027091114IPR017970Homeobox, conserved site
PROSITE profilePS5084844.476239471IPR002913START domain
SuperFamilySSF559617.0E-36240470No hitNo description
CDDcd088751.58E-132243467No hitNo description
SMARTSM002345.8E-66248468IPR002913START domain
PfamPF018522.6E-59249468IPR002913START domain
Gene3DG3DSA:3.30.530.201.2E-4345436IPR023393START-like domain
SuperFamilySSF559612.9E-25487719No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010090Biological Processtrichome morphogenesis
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 728 aa     Download sequence    Send to blast
MFQPNMMDSQ LHHLDMTQNT SESDLVRLRD EEFDSTNTKS GSDNHEGASG DDQDPRPKKK  60
RYHRHTQHQI QEMEAFFKEC PHPDDKQRKE LSRELGLEPL QVKFWFQNKR TQMKTQHERH  120
ENTQLRTENE KLRADNMRYR EALSNASCPN CGGPTAIGEM SFDEHHLRLE NTRLREEIDR  180
ISAIAAKYVG KPVVNYPLLS SPMAPRPLEL GVGNFGAQPG IGGDIYGAGD LLRSIGGHSD  240
ADKPMIIELA VAAMEELIRM AQMGEPLWMS SLDGTNAVLN EDEYIRIFPR GIGPKPSGFK  300
CEASRETAVV IMNHINLVEY LMDVNQWSTV FSGIVSRAMT LEVLSTGVAG NYNGALQVMT  360
AEFQLPTPLV PTRESYFVRY CKQHAEGTWA VVDVSLDNLR PSPAARCRRR PSGCLIQEMP  420
NGYSKVTWVE HIEVDDRGVH NLYKQLVSSG HAFGAKRWVA TLDRQCERLA SAMATNIPTG  480
DVGVITNQEG RKSMLKLAER MVISFFAGVS ASTAHTWTTL SGTGADDVRV MTRKSVDDPG  540
RPPGIVLSAA TSFWLPVPPK RVFDFLRDEN SRSEWDILSN GGVVQEMAHI ANGRDTGNCV  600
SLLRVNSANS SQSNMLILQE SCTDPTASFV IYAPVDIVAM NVVLNGGDPD YVALLPSGFA  660
ILPDGTTTHG GGIGESGSGG SLLTVAFQIL VDSVPTAKLS LGSVATVNNL IACTVERIKA  720
ALSCETA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.12G075600.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021630856.10.0homeobox-leucine zipper protein HDG2-like isoform X4
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLA0A2C9UVY10.0A0A2C9UVY1_MANES; Uncharacterized protein
STRINGcassava4.1_002166m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2