PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.12G075600.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 733aa MW: 80417.9 Da PI: 5.9104 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.4 | 1.6e-20 | 59 | 114 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+ qVk+WFqN+R+++k Manes.12G075600.3.p 59 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 114 688999***********************************************999 PP | |||||||
2 | START | 225.4 | 1.7e-70 | 248 | 468 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.... CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla.... 77 ela +a++el+++a+ +ep+W++s +n+de++++f+++ + ++ ea+r+++vv+m++ +lve l+d++ qW++ + Manes.12G075600.3.p 248 ELAVAAMEELIRMAQMGEPLWMSSLdgtnAVLNEDEYIRIFPRGIGpkpsgFKCEASRETAVVIMNHINLVEYLMDVN-QWSTVFSgivs 336 57899********************9998899***********999********************************.*********** PP EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTC CS START 78 kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksng 160 +a+tlev+s+g galq+m+ae+q+++plvp R+++fvRy++q+ +g+w++vdvS+d+ ++ p +R++++pSg+li++++ng Manes.12G075600.3.p 337 RAMTLEVLSTGvagnynGALQVMTAEFQLPTPLVPtRESYFVRYCKQHAEGTWAVVDVSLDNLRPSPA----ARCRRRPSGCLIQEMPNG 422 *****************************************************************995....****************** PP EEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 161 hskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 +skvtwveh+++++r +h+l+++lv+sg+a+gak+wvatl+rqce+ Manes.12G075600.3.p 423 YSKVTWVEHIEVDDRGVHNLYKQLVSSGHAFGAKRWVATLDRQCER 468 ********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-22 | 37 | 114 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.61E-20 | 45 | 116 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.957 | 56 | 116 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.8E-20 | 57 | 120 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 4.1E-18 | 59 | 114 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.50E-19 | 59 | 117 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 91 | 114 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 44.476 | 239 | 471 | IPR002913 | START domain |
SuperFamily | SSF55961 | 7.0E-36 | 240 | 470 | No hit | No description |
CDD | cd08875 | 1.74E-132 | 243 | 467 | No hit | No description |
SMART | SM00234 | 5.8E-66 | 248 | 468 | IPR002913 | START domain |
Pfam | PF01852 | 2.6E-59 | 249 | 468 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 1.2E-4 | 345 | 436 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 4.35E-23 | 487 | 724 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010090 | Biological Process | trichome morphogenesis | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 733 aa Download sequence Send to blast |
MFQPNMMDSQ LHHLDMTQNT SESDLVRLRD EEFDSTNTKS GSDNHEGASG DDQDPRPKKK 60 RYHRHTQHQI QEMEAFFKEC PHPDDKQRKE LSRELGLEPL QVKFWFQNKR TQMKTQHERH 120 ENTQLRTENE KLRADNMRYR EALSNASCPN CGGPTAIGEM SFDEHHLRLE NTRLREEIDR 180 ISAIAAKYVG KPVVNYPLLS SPMAPRPLEL GVGNFGAQPG IGGDIYGAGD LLRSIGGHSD 240 ADKPMIIELA VAAMEELIRM AQMGEPLWMS SLDGTNAVLN EDEYIRIFPR GIGPKPSGFK 300 CEASRETAVV IMNHINLVEY LMDVNQWSTV FSGIVSRAMT LEVLSTGVAG NYNGALQVMT 360 AEFQLPTPLV PTRESYFVRY CKQHAEGTWA VVDVSLDNLR PSPAARCRRR PSGCLIQEMP 420 NGYSKVTWVE HIEVDDRGVH NLYKQLVSSG HAFGAKRWVA TLDRQCERLA SAMATNIPTG 480 DVGVITNQEG RKSMLKLAER MVISFFAGVS ASTAHTWTTL SGTGADDVRV MTRKSVDDPG 540 RPPGIVLSAA TSFWLPVPPK RVFDFLRDEN SRSEWDILSN GGVVQEMAHI ANGRDTGNCV 600 SLLRVNVSDT QSANSSQSNM LILQESCTDP TASFVIYAPV DIVAMNVVLN GGDPDYVALL 660 PSGFAILPDG TTTHGGGIGE SGSGGSLLTV AFQILVDSVP TAKLSLGSVA TVNNLIACTV 720 ERIKAALSCE TA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.12G075600.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021630854.1 | 0.0 | homeobox-leucine zipper protein HDG2-like isoform X3 | ||||
Refseq | XP_021630855.1 | 0.0 | homeobox-leucine zipper protein HDG2-like isoform X3 | ||||
Swissprot | Q94C37 | 0.0 | HDG2_ARATH; Homeobox-leucine zipper protein HDG2 | ||||
TrEMBL | A0A2C9UUH5 | 0.0 | A0A2C9UUH5_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_002166m | 0.0 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05230.4 | 0.0 | homeodomain GLABROUS 2 |
Link Out ? help Back to Top | |
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Phytozome | Manes.12G075600.3.p |