PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.12G069000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | C3H | ||||||||
Protein Properties | Length: 457aa MW: 49509.8 Da PI: 7.2321 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.9 | 2.6e-11 | 55 | 81 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtG C yG++C+F+H+p Manes.12G069000.1.p 55 PGEPDCVYYLRTGLCGYGSNCRFNHPP 81 5789*********************97 PP | |||||||
2 | zf-CCCH | 36.4 | 8.7e-12 | 98 | 122 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C ++++tGtCkyG++Ck++H++ Manes.12G069000.1.p 98 QPDCGYYLKTGTCKYGSTCKYHHPR 122 789********************96 PP | |||||||
3 | zf-CCCH | 36.2 | 1e-11 | 144 | 167 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C +++rtG Ck+G CkF+H++ Manes.12G069000.1.p 144 KSCAYYMRTGSCKFGVACKFHHPQ 167 56********************97 PP | |||||||
4 | zf-CCCH | 39.5 | 9.2e-13 | 292 | 317 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Cr+f+ tGtCkyG+ Ck++H++ Manes.12G069000.1.p 292 DQPECRYFMNTGTCKYGSDCKYHHPK 317 689*********************96 PP | |||||||
5 | zf-CCCH | 33.4 | 7.4e-11 | 337 | 363 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++ +G Ck+G++C+F H++ Manes.12G069000.1.p 337 PGQPICSNYSMYGLCKFGPTCRFDHPF 363 5789*********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.408 | 54 | 82 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.5E-7 | 54 | 81 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.2E-8 | 56 | 81 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.55E-6 | 59 | 81 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.8E-5 | 60 | 79 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.643 | 95 | 123 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.8E-5 | 95 | 122 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.6E-9 | 98 | 122 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.01E-6 | 99 | 123 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.8E-4 | 101 | 122 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.4E-6 | 139 | 168 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.526 | 140 | 168 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.7E-4 | 142 | 167 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-9 | 143 | 167 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-4 | 145 | 166 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.558 | 290 | 318 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.2E-6 | 290 | 317 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.6E-10 | 292 | 317 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.76E-7 | 293 | 319 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.6E-6 | 296 | 316 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.23E-6 | 335 | 362 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.7E-6 | 336 | 363 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.718 | 336 | 364 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-7 | 338 | 363 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 457 aa Download sequence Send to blast |
MPDNSDNNNN NRQVKSNAVP NQSPDNIEDA IWRLKIHDNQ EQGVMAPSSP YPDRPGEPDC 60 VYYLRTGLCG YGSNCRFNHP PAAQGTQFRE ELPERVGQPD CGYYLKTGTC KYGSTCKYHH 120 PRDRNGAGPV SFNILGLPMR QDEKSCAYYM RTGSCKFGVA CKFHHPQPAP LGAGLPLTEP 180 ADSGPLGSST APSSGLPYVG GLSTWSLLRA PYASGPCLQG PQAYMPVVLS PSQGVFPAQG 240 WNTYVGNLSP MSSASVLGSN LAYNSRNQGE SGSSGQVQLL STTNTNLPER PDQPECRYFM 300 NTGTCKYGSD CKYHHPKDRI AQLGTNPVGP PGLPSRPGQP ICSNYSMYGL CKFGPTCRFD 360 HPFPGYPYSY SLSLQPLSIF DSSLLTYPRI SPPALSSENP VSLSSKFPDW VRNPDGASNK 420 KHQNSDTNTR ISDDQPEQAS SPPPHSSQDS SEPSHD* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.12G069000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021630735.1 | 0.0 | zinc finger CCCH domain-containing protein 3-like | ||||
TrEMBL | A0A2C9UUA4 | 0.0 | A0A2C9UUA4_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_007335m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8030 | 33 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G04990.2 | 1e-123 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.12G069000.1.p |