PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.12G061900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GRAS
Protein Properties Length: 534aa    MW: 59540.6 Da    PI: 6.0035
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.12G061900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS457.39.6e-1401635331374
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          l+++L+ cA+avs++dl +aq+l+ +l++++s +g p+qRl ay++e+L arla+s+s++y+al+++e +    +e l+++++++ev+P+
  Manes.12G061900.1.p 163 LKHVLVVCAQAVSENDLLKAQWLMDELRQMVSVSGGPIQRLGAYMLEGLVARLASSGSSIYRALRCREPA---NAELLSYMHILYEVCPY 249
                          6899*****************************************************************9...89*************** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
                          +kf+++ aN aI ea++ e++vHiiDf+i+qG QW++L+qa+a+Rp+gpp++RiTg++ ++s+  +   l  +g+rL+k+Ae ++vpfef
  Manes.12G061900.1.p 250 FKFGYMSANGAIAEAMKDENKVHIIDFQIGQGSQWVTLIQAFAARPGGPPHIRITGIDGSTSEyaRGGGLTIVGKRLSKLAEIVKVPFEF 339
                          **********************************************************9888888999********************** PP

                 GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                          ++ +a +  ++++e+L v+pgEalaVn+++ lh+++desvs+e++rd++L+lvkslsPkvv+++eqe+++n++ F+ rfle+l+yy+a+f
  Manes.12G061900.1.p 340 HA-AAMSGCEVQVENLGVRPGEALAVNFAFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLIEQESNTNTAAFFPRFLETLNYYMAMF 428
                          **.89999********************************************************************************** PP

                 GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
                          +s++++lpr+++eri+vE+++l+r++vn++aceg+er+erhe l+kWr+r+++aGF+p+pls+ +++++k+ll+++ +  yr+ee++g+l
  Manes.12G061900.1.p 429 ESIDVTLPRNHKERINVEQHCLARDVVNIIACEGTERVERHELLGKWRSRFRMAGFTPYPLSSLVNATIKTLLENYCD-KYRLEERDGAL 517
                          ****************************************************************************95.5********** PP

                 GRAS 359 vlgWkdrpLvsvSaWr 374
                          +lgW++r Lv+ +aW+
  Manes.12G061900.1.p 518 YLGWMNRDLVASCAWK 533
                          ***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098569.349137514IPR005202Transcription factor GRAS
PfamPF035143.3E-137163533IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0005737Cellular Componentcytoplasm
GO:0004871Molecular Functionsignal transducer activity
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MSTRLYNQPM QEVEDYCMPQ FQTLDHQLCH SGGSQGSNLS TLTSREQYCT LESYSANGSC  60
TIYRSPSTVS FSPNGSPVSQ QESRSYLPDT RHSPDNNNGS PLSGSCITDD VHDFQDKLKE  120
LENGMFGPDS DIIESTFQNG AIIKSPEMDG LRQIMEAISR ADLKHVLVVC AQAVSENDLL  180
KAQWLMDELR QMVSVSGGPI QRLGAYMLEG LVARLASSGS SIYRALRCRE PANAELLSYM  240
HILYEVCPYF KFGYMSANGA IAEAMKDENK VHIIDFQIGQ GSQWVTLIQA FAARPGGPPH  300
IRITGIDGST SEYARGGGLT IVGKRLSKLA EIVKVPFEFH AAAMSGCEVQ VENLGVRPGE  360
ALAVNFAFVL HHMPDESVST ENHRDRLLRL VKSLSPKVVT LIEQESNTNT AAFFPRFLET  420
LNYYMAMFES IDVTLPRNHK ERINVEQHCL ARDVVNIIAC EGTERVERHE LLGKWRSRFR  480
MAGFTPYPLS SLVNATIKTL LENYCDKYRL EERDGALYLG WMNRDLVASC AWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-6217053226378Protein SCARECROW
5b3h_A3e-6217053225377Protein SCARECROW
5b3h_D3e-6217053225377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.12G061900.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021630861.10.0scarecrow-like transcription factor PAT1
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A2C9UTT80.0A0A2C9UTT8_MANES; Uncharacterized protein
STRINGcassava4.1_032811m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16533497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]