PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.12G058700.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

HB-other

Protein Properties

Length: 1133aa MW: 128175 Da PI: 7.4707

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.12G058700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	15	4.4e-05	2	27	31	56
HHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 31 eeLAkklgLterqVkvWFqNrRakek 56 eeLA+ l+Lt +qV+ WF +R ++k Manes.12G058700.1.p 2 EELAAVLDLTLKQVQGWFVEKRRRDK 27 89*********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00086	0.00151	1	29	No hit	No description
PROSITE profile	PS50071	10.139	1	29	IPR001356	Homeobox domain
SuperFamily	SSF46689	9.41E-5	2	31	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.8E-5	2	27	IPR009057	Homeodomain-like
SMART	SM00571	2.1E-11	344	403	IPR018501	DDT domain
PROSITE profile	PS50827	13.308	344	403	IPR018501	DDT domain
Pfam	PF02791	2.2E-9	345	400	IPR018501	DDT domain
Pfam	PF15612	5.2E-9	624	664	IPR028942	WHIM1 domain
Pfam	PF15613	4.5E-12	756	828	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1133 aa Download sequence Send to blast
MEELAAVLDL TLKQVQGWFV EKRRRDKSKD MSIEPPCLSK KLSVVKGRNG LGVAPANRKI 60 HKQQNSLIVH ASSDDADRIH KNKRKKKSIL IQDFLTPDYI LRKIFRKDGP PLGVAFDSLP 120 SRALHNGEDS RNSSATCQEN ERAKRRKVSK QGKLSCQDNN DDAPVKKHGI GKGLMTVWRA 180 TNPNGGDFPT GIPVADREIV PQISTPVARK PLRQQKRKRQ LVSIMKQRRL ENKSQHRRKF 240 SIKRREVESK RDESQNHPCK EKCELALEGV ISQERADQLT MLLDDEELEL RELQAGPNPL 300 TCSEHCANNR LHGCTLCKDL LPKFPPNSVK MKQPFAKQPW DSSPETVKKL FKVFHFLYTY 360 SVAIDICPFT LDEFAQAFYD KDSLLLGKLH VALLKLLLSD VEKEINSGFL PQLSISCQFL 420 ALIHSVEAQE FVVEFWRKSL NPLTWTEIMR QVLVAAGFGS RQGSLHRESL SKEMSLMVKY 480 GLRPGTLKGE LFKLLSERGN NGLKVPDLAK SLQITELTVG KTTEELELLI SSTLSSDITL 540 FEKISPSAYR LRISTLSKET NDFQSDNEDS GSVHDDFNDC GTCSSSDSEC DSDNTNSRKP 600 KYSNHHGRKK NMLTIYNEID ESHPGEVWLL GLMEGEYSDL SIEEKLNALV ALIDLLSAGS 660 SIRMEDVKRP AVESVPKMHH YGSGAKIKRS SLKQDNLPRP SWVHVGQLDN SRESYSLSTS 720 RPIDSSALIV RFNEGEKAPG KGMKETGGVD LHPLQSIFLG SDRRHNRYWL FLGPCNSHDP 780 GHKRVYFESS EDGHWEVIDT QEALRGLLSI LDDRGTREAR LIESLEKREA FLCQEMARNV 840 VNHAENRHLT RSDQLELEII REDSTSPVSD VDNNLSLTEV MKDSLPPCGA IILGGKKEEE 900 DNRKWSCLQE FDAWLWNNFY CDLNAVKRIK RSYFESLTRC ETCHDLYWRD EKHCRICHTT 960 FELDFDLEER YAIHSATCRE KGVKEMLPKH KVLPSQLQSL KAAVHAIELA MPEEALLGAW 1020 TKSAHRLWVK RLRRTSSLAE LLQVVADFVA AINEDWLCQC DVVHDSNTPM EEIIACFPAM 1080 PQTSSALALW LVKLDDLISP YLESIQCGNN QESGTKCTGK QASTLGAHSH DI*

Sequence ? help Back to Top

Protein Sequence Length: 1133 aa Download sequence Send to blast

MEELAAVLDL TLKQVQGWFV EKRRRDKSKD MSIEPPCLSK KLSVVKGRNG LGVAPANRKI  60
HKQQNSLIVH ASSDDADRIH KNKRKKKSIL IQDFLTPDYI LRKIFRKDGP PLGVAFDSLP  120
SRALHNGEDS RNSSATCQEN ERAKRRKVSK QGKLSCQDNN DDAPVKKHGI GKGLMTVWRA  180
TNPNGGDFPT GIPVADREIV PQISTPVARK PLRQQKRKRQ LVSIMKQRRL ENKSQHRRKF  240
SIKRREVESK RDESQNHPCK EKCELALEGV ISQERADQLT MLLDDEELEL RELQAGPNPL  300
TCSEHCANNR LHGCTLCKDL LPKFPPNSVK MKQPFAKQPW DSSPETVKKL FKVFHFLYTY  360
SVAIDICPFT LDEFAQAFYD KDSLLLGKLH VALLKLLLSD VEKEINSGFL PQLSISCQFL  420
ALIHSVEAQE FVVEFWRKSL NPLTWTEIMR QVLVAAGFGS RQGSLHRESL SKEMSLMVKY  480
GLRPGTLKGE LFKLLSERGN NGLKVPDLAK SLQITELTVG KTTEELELLI SSTLSSDITL  540
FEKISPSAYR LRISTLSKET NDFQSDNEDS GSVHDDFNDC GTCSSSDSEC DSDNTNSRKP  600
KYSNHHGRKK NMLTIYNEID ESHPGEVWLL GLMEGEYSDL SIEEKLNALV ALIDLLSAGS  660
SIRMEDVKRP AVESVPKMHH YGSGAKIKRS SLKQDNLPRP SWVHVGQLDN SRESYSLSTS  720
RPIDSSALIV RFNEGEKAPG KGMKETGGVD LHPLQSIFLG SDRRHNRYWL FLGPCNSHDP  780
GHKRVYFESS EDGHWEVIDT QEALRGLLSI LDDRGTREAR LIESLEKREA FLCQEMARNV  840
VNHAENRHLT RSDQLELEII REDSTSPVSD VDNNLSLTEV MKDSLPPCGA IILGGKKEEE  900
DNRKWSCLQE FDAWLWNNFY CDLNAVKRIK RSYFESLTRC ETCHDLYWRD EKHCRICHTT  960
FELDFDLEER YAIHSATCRE KGVKEMLPKH KVLPSQLQSL KAAVHAIELA MPEEALLGAW  1020
TKSAHRLWVK RLRRTSSLAE LLQVVADFVA AINEDWLCQC DVVHDSNTPM EEIIACFPAM  1080
PQTSSALALW LVKLDDLISP YLESIQCGNN QESGTKCTGK QASTLGAHSH DI*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. May prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing. {ECO:0000250\|UniProtKB:F4HY56}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.12G058700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021630778.1	0.0	homeobox-DDT domain protein RLT3, partial
Swissprot	F4JRF5	0.0	RLT3_ARATH; Homeobox-DDT domain protein RLT3
TrEMBL	A0A2C9UTP9	0.0	A0A2C9UTP9_MANES; Uncharacterized protein
STRING	cassava4.1_000562m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6118	15	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	0.0	Homeodomain-like transcriptional regulator

Link Out ? help Back to Top
Phytozome	Manes.12G058700.1.p