PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.12G016000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family Trihelix
Protein Properties Length: 400aa    MW: 45874.1 Da    PI: 6.5189
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.12G016000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix86.63e-2789170286
             trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          W ++e++ Li +rrem+  ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk k+++++     s +++y+++++
  Manes.12G016000.1.p  89 WVQDETRSLIGLRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHQDRGS---GSAKMSYYKEID 170
                          ********************************************************************84...556899***997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.0E-479150IPR009057Homeodomain-like
PROSITE profilePS500908.45581145IPR017877Myb-like domain
SMARTSM007170.002285147IPR001005SANT/Myb domain
CDDcd122039.58E-2987152No hitNo description
PfamPF138371.4E-2188172No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MYLSEKPRPI DFYKEEVLPT TRDNMIIEVV SSSGDLPPHQ HHLHNPHNPH PQQPPQQQQQ  60
QQQQQIILGE SSGEDTHEVK APKKRAETWV QDETRSLIGL RREMDGLFNT SKSNKHLWEQ  120
ISAKMREKGF DRSPTMCTDK WRNLLKEFKK AKHQDRGSGS AKMSYYKEID EILRDRSKNA  180
QYKSPTPTSK VDSYMQFADK GFDDTSISFG PVEASGRPTL NLERRLDHDG HPLAITAAEA  240
VAASAVPPWN WRETPGNGAE SQSFVGRVIT VKYGDYTRRI GIDGTADAIK EAIKSAFRLR  300
TKRAFWLEDE DEIIRSLDRD MPVGNYTLHL DEGLSVKVCL YDESDHIPVH TEEKTFYSED  360
DYRDFLTRRG WSCLREFDGY RNIDNMDDLR PGAIYRGAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A3e-5183168186DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.12G016000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021631392.10.0trihelix transcription factor GT-1-like isoform X1
SwissprotQ9FX530.0TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBLA0A2C9UTT30.0A0A2C9UTT3_MANES; Uncharacterized protein
STRINGcassava4.1_009069m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68173248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.10.0Trihelix family protein
Publications ? help Back to Top
  1. Le Gourrierec J,Li YF,Zhou DX
    Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex.
    Plant J., 1999. 18(6): p. 663-8
    [PMID:10417717]