PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.12G012100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | NF-YC | ||||||||
Protein Properties | Length: 140aa MW: 15694.2 Da PI: 10.7218 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 51.2 | 2.7e-16 | 3 | 90 | 11 | 97 |
NF-YC 11 ekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97 e+++++k+ ++P r+k+i+k d+d+++++++a ++s++ elf+ l+ +s a e+kr+ +k i av+r + + dfl+d p Manes.12G012100.1.p 3 ENTEEVKRPQFPTGRVKRIVKLDKDINKVTSDALLMVSRSTELFLQFLAEKSAEVAMEKKRKIVKLDHIRIAVKRHQpTRDFLLDSLP 90 8899*********************************************************************9976489*****987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.54E-17 | 5 | 91 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 8.6E-18 | 5 | 76 | IPR009072 | Histone-fold |
Pfam | PF00808 | 5.9E-18 | 12 | 75 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 140 aa Download sequence Send to blast |
MAENTEEVKR PQFPTGRVKR IVKLDKDINK VTSDALLMVS RSTELFLQFL AEKSAEVAME 60 KKRKIVKLDH IRIAVKRHQP TRDFLLDSLP VPTHLSGKPP VEKTRPTPAA DKSLPPGTRR 120 IDSFFAKSAN EAPVQINEN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.12G012100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021631336.1 | 2e-96 | dr1-associated corepressor | ||||
TrEMBL | A0A2C9USQ5 | 4e-95 | A0A2C9USQ5_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_026058m | 6e-96 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11105 | 31 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43250.1 | 1e-47 | nuclear factor Y, subunit C13 |
Link Out ? help Back to Top | |
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Phytozome | Manes.12G012100.1.p |