PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.12G002600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 159aa MW: 18501.8 Da PI: 9.0237 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 48.1 | 1.5e-15 | 2 | 48 | 5 | 50 |
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS.EEEEEE CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg.klyeys 50 ++s+ +v f+kR+ ++ KKAeELS LC++ v++i f ++g k+ +++ Manes.12G002600.1.p 2 STSRSKVMFCKRKRTLKKKAEELSKLCGVPVCLICFEPDGtKIDTWP 48 67999**********************************94577776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 8.8E-4 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 11.241 | 1 | 41 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 1.10E-13 | 2 | 49 | No hit | No description |
Pfam | PF00319 | 3.6E-14 | 4 | 41 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.96E-14 | 6 | 80 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MSTSRSKVMF CKRKRTLKKK AEELSKLCGV PVCLICFEPD GTKIDTWPED KKEVGDILVK 60 YIYILNKDNI DLQLGFMDAN NKNQDLVAKE ESCKHEEKKK KKKKKVFETW NTRLDYLPEE 120 SLHDILKFLE QKAEILEERI MQMAMIRVLA AKSNQCIT* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 98 | 104 | KKKKKKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.12G002600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021629197.1 | 1e-112 | agamous-like MADS-box protein AGL103 | ||||
TrEMBL | A0A2C9UTM6 | 1e-111 | A0A2C9UTM6_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_027066m | 5e-69 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF17113 | 4 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65330.1 | 2e-10 | AGAMOUS-like 78 |
Link Out ? help Back to Top | |
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Phytozome | Manes.12G002600.1.p |