PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.12G002400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family AP2
Protein Properties Length: 704aa    MW: 77132.1 Da    PI: 6.5051
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.12G002400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.13.3e-11280336155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  Manes.12G002400.1.p 280 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 336
                          57*******************4444.2455535555.779999**************98 PP
2AP246.78.1e-15379430155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Manes.12G002400.1.p 379 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 430
                          57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.32E-19280346No hitNo description
SuperFamilySSF541719.81E-15280346IPR016177DNA-binding domain
PfamPF008471.2E-8280336IPR001471AP2/ERF domain
SMARTSM003801.1E-22281350IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.4E-12281345IPR001471AP2/ERF domain
PROSITE profilePS5103217.319281344IPR001471AP2/ERF domain
PRINTSPR003673.8E-6282293IPR001471AP2/ERF domain
CDDcd000186.05E-25379440No hitNo description
SuperFamilySSF541711.11E-17379440IPR016177DNA-binding domain
PfamPF008471.0E-9379430IPR001471AP2/ERF domain
PROSITE profilePS5103219.045380438IPR001471AP2/ERF domain
SMARTSM003801.5E-33380444IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-18380439IPR001471AP2/ERF domain
PRINTSPR003673.8E-6420440IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 704 aa     Download sequence    Send to blast
MASMNNWLGF SLCPQELPSQ SDHHQDHSQN TTSRLGFHSD EISGTDVSGE CFDLTSAPSL  60
NLPPSFGILE AFRNNQSQDW NMKGLGMNPD TTYKTNSDLS VLMGTSCSSQ SLDQNQEPKL  120
ENFLGGHSFA NHEHKLPGCN PMYSTSGDYM LQSCSLQPND RTSNHEDTSS INTGSNNSSI  180
GLSMIKTWLR NQPAPTQQQE TNNNGGGAQS LSLSMSTGSQ SGSPLPLLTA NTGESNVNGG  240
DHSSSSDNNK QQKTTALDSQ TGAIDAVPRK SIDTFGQRTS IYRGVTRHRW TGRYEAHLWD  300
NSCRREGQTR KGRQGGYDKE EKAARAYDLA ALKYWGTTTT TNFPISNYEK EIEDMKHMTR  360
QEYVASLRRK SSGFSRGASI YRGVTRHHQH GRWQARIGRV AGNKDLYLGT FSTQEEAAEA  420
YDIAAIKFRG LNAVTNFDMS RYDVNSILES STLPIGGAAK RLKDAEQAEM TIDSHRTDNE  480
NISSQLTDGI SSYGTSHYPW PTVAFQQPHH NHHQPFSMHY PYGQRLWCKQ EQDTEPNNQS  540
FQDIHQLQLG NNHNFFQPSS VLHNLMNMDS SSMEHSSGSN SVMYSSGGGD GNCGGNLSYQ  600
GMGYGSYAIP MATVIGNSDG DQNQGNNGFG YENVVGWSDP CHAKNLYYLA QQSAAGGVMK  660
GGAYDQGSAC NNWVPTAVPT LVPRSSNVAV CHGASTFTVW KDT*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.12G002400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021631367.10.0AP2-like ethylene-responsive transcription factor BBM2
SwissprotQ8LSN21e-147BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A2C9USA60.0A0A2C9USA6_MANES; Uncharacterized protein
STRINGcassava4.1_002713m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81862840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-135AP2 family protein