PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.11G156700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 306aa    MW: 33080.1 Da    PI: 4.4777
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.11G156700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.00016279302123
                          EEETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                          + C+ C++sF +   L++H +  H
  Manes.11G156700.1.p 279 FACKTCDRSFGSDAALQSHSKAkH 302
                          78*****************88767 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.697279305IPR007087Zinc finger, C2H2
PROSITE patternPS000280281302IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MEFWGVEVKA GEPLKVTPEL DRIIHLSQAA LGESKKEKGN ESVPLFLKID DKKIVLGTLS  60
PEKIPQLSFD LVFEREVELS HNWKSGSVYF CGYQTPLPEE EEYPTLIGDS EDEEPFPLIN  120
ADNGSVQLQV ENAKPSKGKS TDAKPDASAK QKAKPVEPSK EAKAEDDSDD DDSDEDDDED  180
DSDDEEGDSD EEMSVDSEKE NDSDSEYEET PKKPEKGKKR SNDSATKTPV PAKKIKSDTP  240
QKTDGKKGGH TATPHPAKGK AAANGSNAKA QTPKSGGQFA CKTCDRSFGS DAALQSHSKA  300
KHGGK*
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.11G156700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021628709.11e-179histone deacetylase HDT1-like
SwissprotQ8LJS21e-71HDT1_SOYBN; Histone deacetylase HDT1
TrEMBLA0A2C9V3P60.0A0A2C9V3P6_MANES; Uncharacterized protein
STRINGcassava4.1_013369m1e-172(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10253067
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.26e-38histone deacetylase 3