PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.11G152400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 293aa    MW: 32159.6 Da    PI: 6.2846
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.11G152400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.00025208230123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++Cg  F++   L  H+r+H
  Manes.11G152400.1.p 208 HECSICGSEFTSGQALGGHMRRH 230
                          78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.56E-5205233No hitNo description
PfamPF139122.4E-11208232IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.221208235IPR007087Zinc finger, C2H2
PROSITE patternPS000280210230IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MEFMEAQEEF MGSNDLSQIV KSKRTKRLRS SSAVTSSSSS GFGGSGGETG LVGEEHGSIS  60
SPTSCSEIYE STEEEEDMAN CLILLAQGDG PRKQQQQVSD ENNGRMEKEK FSARKFSDPS  120
ATTNYKPDFF VYECKTCGHR ASHKKPKSIV EEKKILLVSP LMDDLEDCQL NKSSSTFSSD  180
HLQPQPPPSL QTSNKGCGFL GNNKAKIHEC SICGSEFTSG QALGGHMRRH RANTANNVNS  240
NDQMKPRNIL SLDLNLPAPE EEHHHRESKF QFAATTQQAL VFSSPALVDC HY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.11G152400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021627582.10.0zinc finger protein ZAT5-like
TrEMBLA0A2C9V1J50.0A0A2C9V1J5_MANES; Uncharacterized protein
STRINGcassava4.1_031269m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.12e-38C2H2 family protein