PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.11G151100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 347aa    MW: 38960.3 Da    PI: 7.6813
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.11G151100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.4e-161462148
                         TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                         +g+W++eEd +l+++++++G+g +W + +++ g++R++k+c++rw++yl
  Manes.11G151100.1.p 14 KGPWSPEEDSKLKEYIEKFGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62
                         79*********************************************97 PP
2Myb_DNA-binding39.11.7e-1269111246
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          g ++ eEd ++  +++  G++ W+ Ia+ ++ gRt++++k++w++
  Manes.11G151100.1.p  69 GEFSDEEDRIICTLFANIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                          789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.199962IPR017930Myb domain
SuperFamilySSF466893.91E-2711109IPR009057Homeodomain-like
SMARTSM007171.5E-121364IPR001005SANT/Myb domain
PfamPF002491.8E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-241569IPR009057Homeodomain-like
CDDcd001674.27E-91662No hitNo description
PROSITE profilePS5129422.10463117IPR017930Myb domain
SMARTSM007176.8E-1267115IPR001005SANT/Myb domain
PfamPF002493.5E-1169111IPR001005SANT/Myb domain
CDDcd001674.66E-870113No hitNo description
Gene3DG3DSA:1.10.10.601.1E-2370117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDSKLKEYIE KFGTGGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPNIKHGE FSDEEDRIIC TLFANIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMAV  120
APQSQTKPFS FPSPHHQSSP LSSHSLLSLY KDSSSSSFPY FPPNFKPFTT VFDPISPIPS  180
NLLAKNTTTT ATNSSSLFQT QESLLNPLHY YHPVKDSNNG SSSNNLLIFG SEASCSSNSD  240
GSCSQISYGG REIKQEDMGF QSYISNGYEE NQKFMFSYGI NSCNGSENLN QWTEKTTGYF  300
GETSPFEYDL EDVKQLISSS SNNSCNNNNN ILLDENKTQE KYMYYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.11G151100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0527211e-117KM052721.1 Gossypium hirsutum RAX-like transcription factor RAX2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021628946.10.0transcription factor RAX2-like
TrEMBLA0A2C9V1M90.0A0A2C9V1M9_MANES; Uncharacterized protein
STRINGcassava4.1_026964m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.14e-76myb domain protein 36