PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.11G149000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | TCP | ||||||||
Protein Properties | Length: 199aa MW: 21355.4 Da PI: 10.0013 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 104.6 | 1.6e-32 | 28 | 95 | 6 | 73 |
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73 ++ +++h+kv+gRdRR+Rl+a+caar+F+L++eLG ++d++tieWLl++a+p+i ++tg + +s+ + Manes.11G149000.1.p 28 KPRKDRHSKVNGRDRRIRLPAPCAARIFQLTRELGNKTDGETIEWLLRKAEPSIVAATGHGITSKANI 95 5789********************************************************65555333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.2E-28 | 30 | 108 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.714 | 30 | 84 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MNLPSSSQRG RPKSISLNTP KLLINNAKPR KDRHSKVNGR DRRIRLPAPC AARIFQLTRE 60 LGNKTDGETI EWLLRKAEPS IVAATGHGIT SKANIAPAPP VAAAASGQSF ISPLSSGKLP 120 LGRVDFSGPG VMYPCDASGA VTKAQGILLK NCEFPRPEQA SPSFEFDLVA NFDKEFAVND 180 VFQFMTGNDL EGEVQLQV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.11G149000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021627378.1 | 1e-144 | transcription factor TCP9-like | ||||
TrEMBL | A0A2C9V1I7 | 1e-143 | A0A2C9V1I7_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_021810m | 1e-144 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3819 | 33 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 6e-30 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.11G149000.1.p |