PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.11G148500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C3H
Protein Properties Length: 314aa    MW: 33884 Da    PI: 9.7281
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.11G148500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.11.3e-12138164127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          ykt lCr +  +G+C+yG++C+FaHg+
  Manes.11G148500.1.p 138 YKTDLCRSWEDFGHCRYGSKCQFAHGK 164
                          9************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902297.98E-10137168IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-7137164IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-16137169IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.417137165IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-9138164IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MDALHGSKKI PKLNSINGSV SPINTRLNID STLIRYLRGG SPILSSSCNG NNDAFYSPAI  60
SANNSSFGRS LSPLSSVENV MSTPMFGTPV KVVDDDVLVM DGILVESVSG GRSSRSLASD  120
SSDSPSNSSS SSPGIRAYKT DLCRSWEDFG HCRYGSKCQF AHGKEELRPT CFPMKSKAET  180
HTFKSQTSGS YSSGQKSRFL MAEAAAAASQ TASVSKPEYK NKSPATNIHS VYSSKNTSPV  240
IPPVQRIKPE VHNKSPRTTI MPRDWSPLDD GIKVDLPGDI GYSPKKDVDA YIHSILHGPR  300
TRKRLPVFTE FSQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.11G148500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021628679.10.0uncharacterized protein LOC110626855
TrEMBLA0A2C9V3G20.0A0A2C9V3G2_MANES; Uncharacterized protein
STRINGcassava4.1_031947m1e-179(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117801416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.12e-08C3H family protein