PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.11G142900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 522aa    MW: 57561.3 Da    PI: 9.6045
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.11G142900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.2e-056486123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         + C++C+k F r  nL+ H r H
  Manes.11G142900.1.p 64 FICEICNKGFQRDQNLQLHRRGH 86
                         89*******************88 PP
2zf-C2H211.80.00074140162123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC++C+k +  +s+ k H + +
  Manes.11G142900.1.p 140 WKCEKCSKKYAVQSDWKAHSKIC 162
                          58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.4E-56386IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.95E-76386No hitNo description
PROSITE profilePS5015710.8456486IPR007087Zinc finger, C2H2
SMARTSM003550.0226486IPR015880Zinc finger, C2H2-like
PfamPF121716.3E-56486IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002806686IPR007087Zinc finger, C2H2
SMARTSM0035580105135IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.4E-5128161IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.95E-7135160No hitNo description
SMARTSM00355140140160IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MMSEDGFSAP STFRGFVHQE PNLNPNPNPT TNPVKKKRNL PGTPDPDAEV IALSPKSLMA  60
TNRFICEICN KGFQRDQNLQ LHRRGHNLPW KLKQRSTREV RKKVYICPEN SCVHHDPSRA  120
LGDLTGIKKH YSRKHGEKKW KCEKCSKKYA VQSDWKAHSK ICGTREYRCD CGTLFSRKDS  180
FITHRAFCDA LAEESARFTS VSATINANFR NDLINGAPNS NPHQSTGISQ FSSVLRPEFA  240
TGSELVGDLS MVDGQKPRLP MWLDHANTQM SAIGVANNST FLPEFVHAPQ VNMFGSASSQ  300
AQWLNKYQVE SFAGGSNLSV SALPRGLKEE EGNTGDLSES ITSLYSSNQH QQQRNSARMS  360
ATALLQKAAQ MGSTRSNPAF STSNGIPLMS SPSLSNVTSF NSYDQSKSKE TLKFLSRQPN  420
QAAENFNELA NSLSPSTPAT LLGESNSNTI LSTTSKDLNH FMMQANRKQH HGSSSEVEAS  480
LTRDFLGVGG ETRRPFLQQE LAKFASISSG MDLSQYNSGH R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-37136202369Zinc finger protein JACKDAW
5b3h_F3e-37136202369Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
190102KLKQRSTREVRKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.11G142900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021628439.10.0protein indeterminate-domain 9-like
RefseqXP_021628440.10.0protein indeterminate-domain 9-like
RefseqXP_021628441.10.0protein indeterminate-domain 9-like
SwissprotQ8GYC11e-114IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBLA0A251JWC50.0A0A251JWC5_MANES; Uncharacterized protein
STRINGcassava4.1_005556m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.11e-104C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]