PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.11G139300.4.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family AP2
Protein Properties Length: 489aa    MW: 53630.3 Da    PI: 7.094
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.11G139300.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.56.2e-17166215155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Manes.11G139300.4.p 166 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 215
                          78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.6E-9166215IPR001471AP2/ERF domain
SuperFamilySSF541715.95E-16166224IPR016177DNA-binding domain
CDDcd000181.63E-11167225No hitNo description
SMARTSM003801.3E-32167229IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-17167224IPR001471AP2/ERF domain
PROSITE profilePS5103217.794167223IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-6258302IPR016177DNA-binding domain
CDDcd000182.56E-13258303No hitNo description
SMARTSM003805.7E-13259307IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MLDLNLNAES SESIQNSDSV ALMDKYQYQY PEGSGTSNSS IVNADVSSND DSCSTRACTG  60
DASNSSKNNT SSMFTFNFDI LKVGGGGGGG NENETVAAVT KEFFPLSNGK GVAGDYGNFF  120
GQGSSKNWID LSFERRHDIG DGEVRKVQPP LQQVKKSRRG PRSRSSQYRG VTFYRRTGRW  180
ESHIWDCGKQ VYLGGFDTAH AAARAYDRAA IKFRGVDADI NFNLSDYEED LKQMKNLTKE  240
EFVHILRRQS TGFSRGSSKY RGVTLHKCGR WEARMGQFLG KKAYDKAAIK CNGREAVTNF  300
EPSTYEGEMM SEASNEGSEH NLDLNLGISP SLDDGPRENE GHLQFHLGPY DMDRKSLRQE  360
NPTALMVGDL PFKGPVTTDQ PTSRNNVYAS FFPNEEGAPD KRIELGSSQG LPNWAWQMHG  420
HVTATPMTMF STAASSGFSF SATPPSAATL PSKTLNQAAQ NLCFTPPATM TPSSSHFYYP  480
VKPPRAPP*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.11G139300.4.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021628562.10.0ethylene-responsive transcription factor RAP2-7-like isoform X8
SwissprotQ9SK031e-128RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A251JW320.0A0A251JW32_MANES; Uncharacterized protein
STRINGcassava4.1_006069m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.11e-124related to AP2.7