PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Manes.11G139300.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 489aa MW: 53630.3 Da PI: 7.094 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.5 | 6.2e-17 | 166 | 215 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Manes.11G139300.2.p 166 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 215 78*******************......55************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.6E-9 | 166 | 215 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.95E-16 | 166 | 224 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.63E-11 | 167 | 225 | No hit | No description |
SMART | SM00380 | 1.3E-32 | 167 | 229 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.5E-17 | 167 | 224 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.794 | 167 | 223 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.16E-6 | 258 | 302 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.56E-13 | 258 | 303 | No hit | No description |
SMART | SM00380 | 5.7E-13 | 259 | 307 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 489 aa Download sequence Send to blast |
MLDLNLNAES SESIQNSDSV ALMDKYQYQY PEGSGTSNSS IVNADVSSND DSCSTRACTG 60 DASNSSKNNT SSMFTFNFDI LKVGGGGGGG NENETVAAVT KEFFPLSNGK GVAGDYGNFF 120 GQGSSKNWID LSFERRHDIG DGEVRKVQPP LQQVKKSRRG PRSRSSQYRG VTFYRRTGRW 180 ESHIWDCGKQ VYLGGFDTAH AAARAYDRAA IKFRGVDADI NFNLSDYEED LKQMKNLTKE 240 EFVHILRRQS TGFSRGSSKY RGVTLHKCGR WEARMGQFLG KKAYDKAAIK CNGREAVTNF 300 EPSTYEGEMM SEASNEGSEH NLDLNLGISP SLDDGPRENE GHLQFHLGPY DMDRKSLRQE 360 NPTALMVGDL PFKGPVTTDQ PTSRNNVYAS FFPNEEGAPD KRIELGSSQG LPNWAWQMHG 420 HVTATPMTMF STAASSGFSF SATPPSAATL PSKTLNQAAQ NLCFTPPATM TPSSSHFYYP 480 VKPPRAPP* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Manes.11G139300.2.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021628562.1 | 0.0 | ethylene-responsive transcription factor RAP2-7-like isoform X8 | ||||
Swissprot | Q9SK03 | 1e-128 | RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7 | ||||
TrEMBL | A0A251JW32 | 0.0 | A0A251JW32_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_006069m | 0.0 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G28550.1 | 1e-124 | related to AP2.7 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Manes.11G139300.2.p |