PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.11G131600.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

Dof

Protein Properties

Length: 318aa MW: 34150.2 Da PI: 9.7339

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.11G131600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.9	2.6e-39	66	126	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+alkcprC+stntkfCy+nnysl+qPr+fCk+CrryWt+GGalrnvPvGgg+r+nkks+ Manes.11G131600.1.p 66 PETALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKSK 126 67899*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-36	50	122	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.2E-32	69	124	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.469	70	124	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	72	108	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MVFSSVPVYL DPPNWQQQAN QPGGARNESP QLPPLPPPPH VGGGGTGSIR PGSMADRARL 60 AKIPQPETAL KCPRCESTNT KFCYFNNYSL TQPRHFCKTC RRYWTRGGAL RNVPVGGGCR 120 RNKKSKSQSS SKSPVSSERK MDPNSSSTNA IPSDNIGHLS PQQNQLPFMS SLHNLTQFGI 180 GNLGLNFGGI QEQMGAASGA SGQTDMGFQM GSNSGMSPAI LSTGVQQFPF FEPPPTGLYP 240 FQNEGVEASS SMLGDSQLRS MNSRSRVSQL APVKMEDNQG LNLSKPFLGI SESNQFWSGN 300 TWTDLSGLNS SSSSHLF*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00281	DAP	Transfer from AT2G28810	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.11G131600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021627282.1	0.0	dof zinc finger protein DOF2.2-like isoform X1
Swissprot	Q9ZV33	3e-60	DOF22_ARATH; Dof zinc finger protein DOF2.2
TrEMBL	A0A2C9V0Z2	0.0	A0A2C9V0Z2_MANES; Uncharacterized protein
STRING	cassava4.1_012086m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF656	34	143

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28810.1	5e-56	Dof family protein

Link Out ? help Back to Top
Phytozome	Manes.11G131600.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]