PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.11G127000.2.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

Nin-like

Protein Properties

Length: 981aa MW: 107128 Da PI: 5.2418

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.11G127000.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.6	1.2e-28	596	647	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl +l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ Manes.11G127000.2.p 596 AEKNVSLGVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 647 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.768	586	667	IPR003035	RWP-RK domain
Pfam	PF02042	1.6E-25	599	647	IPR003035	RWP-RK domain
Gene3D	G3DSA:3.10.20.240	2.0E-24	877	959	No hit	No description
SuperFamily	SSF54277	1.85E-22	877	963	No hit	No description
SMART	SM00666	1.3E-23	880	962	IPR000270	PB1 domain
PROSITE profile	PS51745	20.963	880	962	IPR000270	PB1 domain
Pfam	PF00564	1.0E-17	881	961	IPR000270	PB1 domain
CDD	cd06407	1.36E-33	881	961	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 981 aa Download sequence Send to blast
MENLFSLKEK GKGYWTSPRA QADGMAPSDG GAKNSISEDI FNSFSEFMNF DTYAGWCTSP 60 SATDQMFASY GSSSFQSTPY STFDALSFAE QSCLTSLVGG NALNAAGTSY SSGDKMAVQQ 120 VNVYASDLMD ADDLCAKERT GAQRQIEEMA NCMISRPVGF SLDEKMLRAL SLLRESADGG 180 ILAQVWVPMR RGDQYILTTF EQPYLLDQSL AGYREVSRTY TFSAEVTPDL PLGLPGRVFI 240 SRVPEWTSSV VYYSIAEYLR GQHARNHKVQ GSIALPIFEP PDNVCCAVLE LVTVKEKPNF 300 DSEMENVRLA LQAVNLRSTA PPQLLPQSLS RNQRAALAEI TDVLRAVCHA HSLPLALTWI 360 PCHYMEEAFD EVMKVRVREG NSRSSGKFVL CIERTACYVN DREMQGFVHA CSEHYIEEGQ 420 GIAGKALQSN HPFFFSDVKA YDITKYPLVH HARKYGLNAA VAIRLRSTYT GDDDYILEFF 480 LPVNMKGSSE QQLLLNNLSG TMQRICKSLR TVSDAELKGG EGSAVDFQKG AISSFPPLSV 540 SITSSQTTSS EAVLNLTDKV PLDASSSKYD AMKSDGPHEQ SFNASRRQPE KKRSTAEKNV 600 SLGVLQQYFS GSLKDAAKSI GVCPTTLKRI CRQHGISRWP SRKINKVNRS LKKIQTVLDS 660 VQGVEGGLKF DPTTGGFVAA GSIVQEFDSQ RIFLSPDKNL PARNSQSATE EAVSVPSVPC 720 IDGSNSAVKV EEDEFCMDTC GEVLMKSSIP VIDCSEDSKS IATDAEICQK GRLGCGPWAA 780 MDNASAFAKG TKGSLNSGSA KVDNSDTHFV SRSSCSLGAA EVLDTKEEGD DVMVEHNQPT 840 CSSMTESSNG SGSMIHGSAS SSPSFEEKHL KVKCDDGGSK ISVKATYRED TVRFKFEPSA 900 GCFQLYEEVA KRFKLQNGTF QLKYLDDEEE WVMLVTDSDL QECIEILDYV GKRSVKFLVR 960 DSVFTMGSSG SSNCFLGGSS *

Sequence ? help Back to Top

Protein Sequence Length: 981 aa Download sequence Send to blast

MENLFSLKEK GKGYWTSPRA QADGMAPSDG GAKNSISEDI FNSFSEFMNF DTYAGWCTSP  60
SATDQMFASY GSSSFQSTPY STFDALSFAE QSCLTSLVGG NALNAAGTSY SSGDKMAVQQ  120
VNVYASDLMD ADDLCAKERT GAQRQIEEMA NCMISRPVGF SLDEKMLRAL SLLRESADGG  180
ILAQVWVPMR RGDQYILTTF EQPYLLDQSL AGYREVSRTY TFSAEVTPDL PLGLPGRVFI  240
SRVPEWTSSV VYYSIAEYLR GQHARNHKVQ GSIALPIFEP PDNVCCAVLE LVTVKEKPNF  300
DSEMENVRLA LQAVNLRSTA PPQLLPQSLS RNQRAALAEI TDVLRAVCHA HSLPLALTWI  360
PCHYMEEAFD EVMKVRVREG NSRSSGKFVL CIERTACYVN DREMQGFVHA CSEHYIEEGQ  420
GIAGKALQSN HPFFFSDVKA YDITKYPLVH HARKYGLNAA VAIRLRSTYT GDDDYILEFF  480
LPVNMKGSSE QQLLLNNLSG TMQRICKSLR TVSDAELKGG EGSAVDFQKG AISSFPPLSV  540
SITSSQTTSS EAVLNLTDKV PLDASSSKYD AMKSDGPHEQ SFNASRRQPE KKRSTAEKNV  600
SLGVLQQYFS GSLKDAAKSI GVCPTTLKRI CRQHGISRWP SRKINKVNRS LKKIQTVLDS  660
VQGVEGGLKF DPTTGGFVAA GSIVQEFDSQ RIFLSPDKNL PARNSQSATE EAVSVPSVPC  720
IDGSNSAVKV EEDEFCMDTC GEVLMKSSIP VIDCSEDSKS IATDAEICQK GRLGCGPWAA  780
MDNASAFAKG TKGSLNSGSA KVDNSDTHFV SRSSCSLGAA EVLDTKEEGD DVMVEHNQPT  840
CSSMTESSNG SGSMIHGSAS SSPSFEEKHL KVKCDDGGSK ISVKATYRED TVRFKFEPSA  900
GCFQLYEEVA KRFKLQNGTF QLKYLDDEEE WVMLVTDSDL QECIEILDYV GKRSVKFLVR  960
DSVFTMGSSG SSNCFLGGSS *

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.11G127000.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021627569.1	0.0	protein NLP9-like
Refseq	XP_021627570.1	0.0	protein NLP9-like
Refseq	XP_021627571.1	0.0	protein NLP9-like
Refseq	XP_021627572.1	0.0	protein NLP9-like
Refseq	XP_021627573.1	0.0	protein NLP9-like
Refseq	XP_021627574.1	0.0	protein NLP9-like
Refseq	XP_021627576.1	0.0	protein NLP9-like
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A251JVM8	0.0	A0A251JVM8_MANES; Uncharacterized protein
STRING	cassava4.1_000984m	0.0	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Manes.11G127000.2.p

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]