PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.11G123600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bZIP
Protein Properties Length: 411aa    MW: 44875.7 Da    PI: 6.5149
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.11G123600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.81.5e-10216274563
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                          kr++r   NR +A rs +RK  +i+eLe+kv++L++e ++L  +l  l+     l+se+
  Manes.11G123600.1.p 216 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTSEN 274
                          9***********************************************99999999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.7E-16212276IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.99214277IPR004827Basic-leucine zipper domain
PfamPF001706.6E-8216274IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.1E-10216271No hitNo description
SuperFamilySSF579591.05E-10216267No hitNo description
CDDcd147032.57E-26217266No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MDKDKATGHG GGLPPPSGRF SSFSLPGSSF NVKPEPQSSA FPPMAPVGSS DPSHFGHGSD  60
SSRFSHDISR MPDNPPKNLG HRRAHSEILT LPDDISFDSD LGVVGGADAP SLSDENEEDL  120
LSIYLDMDKF NSSSATSTFQ LGESSTPASG SAVPADFGAG PSERPRVRHQ HSQSMDGSTT  180
IKPEMLVSGA EEVSPADSKK SISAAKLAEL ALVDPKRAKR IWANRQSAAR SKERKMRYIA  240
ELERKVQTLQ TEATSLSAQL TLLQRDTNGL TSENSELKLR LQTMEQQVHL QDALNDALKE  300
EIQHLKVLTG QAMPNGGAMM NFASFGGGQQ FYPNNHAMHT LLTTQQFQQL QIHSQKQQHQ  360
FQQHQLHQLQ QQQQQQQEQQ PVGDLKMRGT MRSPNQKENA SDINPPATNE *
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor with an activatory role.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00126DAPTransfer from AT1G06070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.11G123600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6647243e-37EU664724.1 Jatropha curcas microsatellite JATR114 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021628625.10.0probable transcription factor PosF21
SwissprotQ040881e-153POF21_ARATH; Probable transcription factor PosF21
TrEMBLA0A2C9V1V80.0A0A2C9V1V8_MANES; Uncharacterized protein
STRINGcassava4.1_008721m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55173249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06070.11e-166bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]