PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.11G113400.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

bHLH

Protein Properties

Length: 313aa MW: 34073.3 Da PI: 9.2579

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.11G113400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.4	8.4e-11	246	291	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri ++ +L+el+P+ +k s +++L +Av++Ik Lq Manes.11G113400.1.p 246 SIAERERRTRISGRLKKLQELVPNM----DKQTSYSDMLDLAVQHIKGLQ 291 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.77	240	290	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.32E-14	243	306	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.86E-10	244	295	No hit	No description
Gene3D	G3DSA:4.10.280.10	9.9E-13	245	303	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-11	246	296	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.3E-8	246	291	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MAGDAPISRK RLHYCRIIKK ILTSIPYNIK AEEPHILRYD ISNTIQTLIN SSSDPRPPPK 60 SSAAVGGLQR SYGFNEINSS LVRQKSSPAG FQSHLSTENG FSITRGSGGH NSHNGATGSH 120 TMSRLKSQLS FTRQDSLSQI SEISESAAEG INSNSGHQSS HSYSAAGFGM GSWDNTNSIV 180 FSGPPSKLAK NIDGDIFSCL NGLETQFSLP QTSLEMATVE KLLSIPEDSV PCKIRAKRGC 240 ATHPRSIAER ERRTRISGRL KKLQELVPNM DKQTSYSDML DLAVQHIKGL QNEIQKLHSE 300 LENCTCGCRP TT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.11G113400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021626990.1	0.0	transcription factor bHLH128-like
Swissprot	Q8H102	7e-78	BH128_ARATH; Transcription factor bHLH128
TrEMBL	A0A2C9V066	0.0	A0A2C9V066_MANES; Uncharacterized protein
STRING	cassava4.1_010829m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7680	31	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05805.1	4e-68	bHLH family protein

Link Out ? help Back to Top
Phytozome	Manes.11G113400.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]