PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.11G110900.3.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

Nin-like

Protein Properties

Length: 655aa MW: 73063.4 Da PI: 6.2501

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.11G110900.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.6	1.2e-28	598	647	2	51
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 ek+isle+l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rk+k+ Manes.11G110900.3.p 598 EKTISLEVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKLKK 647 79**********************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.79	587	654	IPR003035	RWP-RK domain
Pfam	PF02042	7.3E-25	600	647	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 655 aa Download sequence Send to blast
MEDGGFKTDS VSRNLPGAAM DLDFMDELLY DGCWLTTDGL NISQPGLSSS TVPNDSSQYF 60 PFVDTNLHQQ INQDGMENNF PENPPLSNPK VEQLADDESQ DHKSVKITTS SVSAGFPNEG 120 SELSRSFWIE PRADPGPTSS VKVRLMHAIR RLKECTKDRE VLVQIWVPTK KEGKHVLTTT 180 DQPCFVSLKS ESLARYRYVS ENYHFPVEGD SKESLGLPGR VFLGKLPEST PDVRFFRNDE 240 YPRKTYAKQY NISGSLAVPV FERGTGTCLG VVEVITTTRY INYRSELETI CKALEAFDLR 300 SSQDFCPPSV KACKEFCQAA VPEISEILGS VCETHKLPLA LTWARCFQQG KGGCRHFDEK 360 FANCISTVDS ACFVDDRECL VFHAACSEQF LSLGQGIVGR AFVTNKQCFA SDVTAFSKTD 420 YPLSHHAKVL GLHAAVAIPL RSTHDGSADF VLELFLPKDC RDPEEHKQMQ ELLPIAIQQA 480 CRSLQVVMDK ELEASSLNEP YPLGSSWFAQ MLEAQQKGKR VCVSWDNPEE PKEEFKVATH 540 WDEGLEKLYE GQVFAESGQL QQNSGRKDST EGGNNSSFAG QQSLGSRKTG EKRRTKTEKT 600 ISLEVLRQYF AGSLKDAAKS IGVCPTTLKR ICRQHGISRW PSRKLKKKTF INDE*

Sequence ? help Back to Top

Protein Sequence Length: 655 aa Download sequence Send to blast

MEDGGFKTDS VSRNLPGAAM DLDFMDELLY DGCWLTTDGL NISQPGLSSS TVPNDSSQYF  60
PFVDTNLHQQ INQDGMENNF PENPPLSNPK VEQLADDESQ DHKSVKITTS SVSAGFPNEG  120
SELSRSFWIE PRADPGPTSS VKVRLMHAIR RLKECTKDRE VLVQIWVPTK KEGKHVLTTT  180
DQPCFVSLKS ESLARYRYVS ENYHFPVEGD SKESLGLPGR VFLGKLPEST PDVRFFRNDE  240
YPRKTYAKQY NISGSLAVPV FERGTGTCLG VVEVITTTRY INYRSELETI CKALEAFDLR  300
SSQDFCPPSV KACKEFCQAA VPEISEILGS VCETHKLPLA LTWARCFQQG KGGCRHFDEK  360
FANCISTVDS ACFVDDRECL VFHAACSEQF LSLGQGIVGR AFVTNKQCFA SDVTAFSKTD  420
YPLSHHAKVL GLHAAVAIPL RSTHDGSADF VLELFLPKDC RDPEEHKQMQ ELLPIAIQQA  480
CRSLQVVMDK ELEASSLNEP YPLGSSWFAQ MLEAQQKGKR VCVSWDNPEE PKEEFKVATH  540
WDEGLEKLYE GQVFAESGQL QQNSGRKDST EGGNNSSFAG QQSLGSRKTG EKRRTKTEKT  600
ISLEVLRQYF AGSLKDAAKS IGVCPTTLKR ICRQHGISRW PSRKLKKKTF INDE*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.11G110900.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021628240.1	0.0	protein NLP2-like isoform X2
Swissprot	Q7X9B9	0.0	NLP2_ARATH; Protein NLP2
TrEMBL	A0A251JUG3	0.0	A0A251JUG3_MANES; Uncharacterized protein
STRING	cassava4.1_001199m	0.0	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Manes.11G110900.3.p