PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.11G087500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | SRS | ||||||||
Protein Properties | Length: 214aa MW: 23049 Da PI: 8.7138 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 189.4 | 1.4e-58 | 12 | 153 | 6 | 154 |
DUF702 6 asCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssae 95 ++CqdCGnqakk+C ++RCRtCCks+gf+C+thv+stW+pa++rr r q l+++ ++aaa+ + ++ ++ + + + ++l ++ Manes.11G087500.1.p 12 SRCQDCGNQAKKECIYMRCRTCCKSKGFQCETHVRSTWIPAYRRRRRPQSLSSSCATAAAAVLAMQQ-QHSS------DQHNPKRLRENP 94 68*********************************************99888876666554333222.2222......223333444455 PP DUF702 96 skkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 + le+ ++P++v+s a frc rvss d++e+++ Yqt+v+igGh+fkGiLydqG+ee Manes.11G087500.1.p 95 LTAGLEVGNFPAQVNSIATFRCFRVSSADKAEDQFVYQTSVNIGGHIFKGILYDQGPEE 153 56679999*************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 1.5E-55 | 11 | 152 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 5.5E-28 | 14 | 55 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 7.7E-23 | 104 | 151 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MMMREGGLLC GSRCQDCGNQ AKKECIYMRC RTCCKSKGFQ CETHVRSTWI PAYRRRRRPQ 60 SLSSSCATAA AAVLAMQQQH SSDQHNPKRL RENPLTAGLE VGNFPAQVNS IATFRCFRVS 120 SADKAEDQFV YQTSVNIGGH IFKGILYDQG PEESSSGHLQ DPNLTNAGGA LSTATAALAS 180 TSSSVAADSL AASYTFPLNA FISGTQLFLH PKS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.11G087500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021627107.1 | 1e-159 | protein SHI RELATED SEQUENCE 1-like | ||||
TrEMBL | A0A2C9V0V6 | 1e-158 | A0A2C9V0V6_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_021477m | 1e-159 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9969 | 25 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66350.1 | 1e-47 | Lateral root primordium (LRP) protein-related |
Link Out ? help Back to Top | |
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Phytozome | Manes.11G087500.1.p |