PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.11G084700.4.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

MYB_related

Protein Properties

Length: 1128aa MW: 123218 Da PI: 4.4479

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.11G084700.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.7	3.7e-10	983	1024	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rW++++ el++++++q+G++ + I + ++ gRt+ q+k+++ k Manes.11G084700.4.p 983 RWSKQDTELFYEGIRQFGTD-LSMIQQLFP-GRTRHQIKLKYKK 1024 9*****************.*****.*********87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF15963	1.7E-28	974	1058	No hit	No description
PROSITE profile	PS51293	9.846	979	1027	IPR017884	SANT domain
SMART	SM00717	1.4E-7	980	1028	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-5	981	1024	IPR009057	Homeodomain-like
CDD	cd00167	1.40E-6	983	1024	No hit	No description
SuperFamily	SSF46689	5.53E-10	983	1030	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1128 aa Download sequence Send to blast
MDSDLDSFDD ILLEPAVAHA RAAGKFQPRA KPRARKITST SLPSVLPSNT REKSDSSFPT 60 TLDTTKPVQS VNPLDDRLIS PVDSSLVLPS IVLGSEELLE NNKNNLKCEP LNSSTQTVGR 120 REDLASPDSL PSEFVVTDSS NNGYSNFLFI EAGSSRLDLD PVDVVVPDTT SSKDVTGNGS 180 KVPVSLSMTT LDVAGEPWKD NDRLSPHEKG SSVTSNLSPA RAENAGSVAA SLDGNGELNS 240 SLLKSVEDVD SLGFDLDQPD IMFPECHASD SRAGKKFQPK VRSHRRKEIS GSSMEQPATV 300 AAVNSHTTQP VESVLTMDKP VDPVCPSSPN LDNESNEPSK ENEVLLPHDN NLELVSPSSK 360 EFMPKGDMSS KEAYLAGLDS NFGQKPSGVA DSPIEVNSLG LDLDPFADIV LPPAISNARA 420 GGKFQPRGKA RPRKVTSESN SFAVSGATVE GPASVVSTVS DNLQSAKFID VGDGRLMDSV 480 YSTLTTMKSM ESKEALRNDD CTNSGVLLFK VDRSSGLENS SHLVASDALH IGDIDRDPHS 540 GLGKSIGENA DIFSGLEYIH DFVTQSPRTE IPLPASSDGT EEHSRFPAQI SVNSSAPGAC 600 NEATENVVTC NEAAVEIDNG KPQSDFQEPG SFPDFESPGI LSESAIALEC CTRNTQPKSM 660 VQNGKEIPST SILPDASPPN TQIDPSESVY IDVGSIPTFP SEDVLDYSSI SFGNFIPADP 720 TRSEFPVNEE RTNLAETSCS SDLNILHHED VSTVPAKESS KDRKRKSSSA SYLAQNESVK 780 SARQLRKRTI ASQVVDGPED EAQDSDGFPS EHRNSSIADG DIDYDYRVDE DNDNEDKVEN 840 TSSSRRASKK SKKPMAEQEK KPVSRRKRKN DAPEQPNQQS RKKFSHSTRR KSRLKDLLSI 900 PEDEIDYQKM PFKDIILLAG YKEDLAIKEA KASKNSTKKS TNSLHGEEED DTVTSEQDGG 960 VADDQSNSLF NCHSFMDKTP TARWSKQDTE LFYEGIRQFG TDLSMIQQLF PGRTRHQIKL 1020 KYKKEERQHP LRLSEALSNR AKDHSYFEKV MEQLQQVAAQ EERESNRGNS VSLTDDEEAQ 1080 LNPETNEEVA KSDEQDEDVT VDQDGDPLKY DEDDDDFDIW GSYKSEY*

Sequence ? help Back to Top

Protein Sequence Length: 1128 aa Download sequence Send to blast

MDSDLDSFDD ILLEPAVAHA RAAGKFQPRA KPRARKITST SLPSVLPSNT REKSDSSFPT  60
TLDTTKPVQS VNPLDDRLIS PVDSSLVLPS IVLGSEELLE NNKNNLKCEP LNSSTQTVGR  120
REDLASPDSL PSEFVVTDSS NNGYSNFLFI EAGSSRLDLD PVDVVVPDTT SSKDVTGNGS  180
KVPVSLSMTT LDVAGEPWKD NDRLSPHEKG SSVTSNLSPA RAENAGSVAA SLDGNGELNS  240
SLLKSVEDVD SLGFDLDQPD IMFPECHASD SRAGKKFQPK VRSHRRKEIS GSSMEQPATV  300
AAVNSHTTQP VESVLTMDKP VDPVCPSSPN LDNESNEPSK ENEVLLPHDN NLELVSPSSK  360
EFMPKGDMSS KEAYLAGLDS NFGQKPSGVA DSPIEVNSLG LDLDPFADIV LPPAISNARA  420
GGKFQPRGKA RPRKVTSESN SFAVSGATVE GPASVVSTVS DNLQSAKFID VGDGRLMDSV  480
YSTLTTMKSM ESKEALRNDD CTNSGVLLFK VDRSSGLENS SHLVASDALH IGDIDRDPHS  540
GLGKSIGENA DIFSGLEYIH DFVTQSPRTE IPLPASSDGT EEHSRFPAQI SVNSSAPGAC  600
NEATENVVTC NEAAVEIDNG KPQSDFQEPG SFPDFESPGI LSESAIALEC CTRNTQPKSM  660
VQNGKEIPST SILPDASPPN TQIDPSESVY IDVGSIPTFP SEDVLDYSSI SFGNFIPADP  720
TRSEFPVNEE RTNLAETSCS SDLNILHHED VSTVPAKESS KDRKRKSSSA SYLAQNESVK  780
SARQLRKRTI ASQVVDGPED EAQDSDGFPS EHRNSSIADG DIDYDYRVDE DNDNEDKVEN  840
TSSSRRASKK SKKPMAEQEK KPVSRRKRKN DAPEQPNQQS RKKFSHSTRR KSRLKDLLSI  900
PEDEIDYQKM PFKDIILLAG YKEDLAIKEA KASKNSTKKS TNSLHGEEED DTVTSEQDGG  960
VADDQSNSLF NCHSFMDKTP TARWSKQDTE LFYEGIRQFG TDLSMIQQLF PGRTRHQIKL  1020
KYKKEERQHP LRLSEALSNR AKDHSYFEKV MEQLQQVAAQ EERESNRGNS VSLTDDEEAQ  1080
LNPETNEEVA KSDEQDEDVT VDQDGDPLKY DEDDDDFDIW GSYKSEY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.11G084700.4.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021628026.1	0.0	uncharacterized protein LOC110626433
TrEMBL	A0A2C9UZK1	0.0	A0A2C9UZK1_MANES; Uncharacterized protein
STRING	cassava4.1_000789m	0.0	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	7e-40	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Manes.11G084700.4.p