PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.11G084700.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

MYB_related

Protein Properties

Length: 1130aa MW: 123376 Da PI: 4.4479

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.11G084700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.7	3.7e-10	985	1026	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rW++++ el++++++q+G++ + I + ++ gRt+ q+k+++ k Manes.11G084700.1.p 985 RWSKQDTELFYEGIRQFGTD-LSMIQQLFP-GRTRHQIKLKYKK 1026 9*****************.*****.*********87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF15963	1.7E-28	976	1060	No hit	No description
PROSITE profile	PS51293	9.846	981	1029	IPR017884	SANT domain
SMART	SM00717	1.4E-7	982	1030	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-5	983	1026	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.61E-10	985	1032	IPR009057	Homeodomain-like
CDD	cd00167	1.40E-6	985	1026	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1130 aa Download sequence Send to blast
MDSDLDSFDD ILLEPAVAHA ARAAGKFQPR AKPRARKITS TSLPSVLPSN TREKSDSSFP 60 TTLDTTKPVQ SVNPLDDRLI SPVDSSLVLP SIVLGSEELL ENNKNNLKCE PLNSSTQTVG 120 RREDLASPDS LPSEFVVTDS SNNGYSNFLF IEAGSSRLDL DPVDVVVPDT TSSKDVTGNG 180 SKVPVSLSMT TLDVAGEPWK DNDRLSPHEK GSSVTSNLSP ARAENAGSVA ASLDGNGELN 240 SSLLKSVEDV DSLGFDLDQP DIMFPECHAS DSRAGKKFQP KVRSHRRKEI SGSSMEQPAT 300 VAAVNSHTTQ PVESVLTMDK PVDPVCPSSP NLDNESNEPS KENEVLLPHD NNLELVSPSS 360 KEFMPKGDMS SKEAYLAGLD SNFGQKPSGV ADSPIEVNSL GLDLDPFADI VLPPAISNAR 420 AGGKFQPRGK ARPRKVTSES NSFAVSGATV EGPASVVSTV SDNLQSAKFI DVGDGRLMDS 480 VYSTLTTMKS MESKEALRND DCTNSGVLLF KVDRSSGLEN SSHLVASDAL HIGDIDRDPH 540 SGLGKSIGEN ADIFSGLEYI HDFVTQSPRT EIPLPASSDG TEEHSRFPAQ ISVNSSAPGA 600 CNEATENVVT CNEAAVEIDN GKPQSDFQEP GSFPDFESPG ILSESAIALE CCTRNTQPKS 660 MVQNGKEIPS TSILPDASPP NTQIDPSESV YIDVGSIPTF PSEDVLDYSS ISFGNFIPAD 720 PTRSEFPVNE ERTNLAETSC SSDLNILHHE DVSTVPAKES SKDRKRKSSS ASYLAQNESV 780 KSARQLRKRT IASQVVDGPE DEAQDSDGFP SEHRNSSIAD GDIDYDYRVD EDNDNEDKVE 840 NTSSSRRASK KSKKPMAEQE KKPVSRRKRK NDAPEQPNQQ SRKKFSHSTR RKSRLKDLLS 900 IPEDEIDYQK MPFKDIILLA GYKEDLAIKE AKASKNSTKK SSTNSLHGEE EDDTVTSEQD 960 GGVADDQSNS LFNCHSFMDK TPTARWSKQD TELFYEGIRQ FGTDLSMIQQ LFPGRTRHQI 1020 KLKYKKEERQ HPLRLSEALS NRAKDHSYFE KVMEQLQQVA AQEERESNRG NSVSLTDDEE 1080 AQLNPETNEE VAKSDEQDED VTVDQDGDPL KYDEDDDDFD IWGSYKSEY*

Sequence ? help Back to Top

Protein Sequence Length: 1130 aa Download sequence Send to blast

MDSDLDSFDD ILLEPAVAHA ARAAGKFQPR AKPRARKITS TSLPSVLPSN TREKSDSSFP  60
TTLDTTKPVQ SVNPLDDRLI SPVDSSLVLP SIVLGSEELL ENNKNNLKCE PLNSSTQTVG  120
RREDLASPDS LPSEFVVTDS SNNGYSNFLF IEAGSSRLDL DPVDVVVPDT TSSKDVTGNG  180
SKVPVSLSMT TLDVAGEPWK DNDRLSPHEK GSSVTSNLSP ARAENAGSVA ASLDGNGELN  240
SSLLKSVEDV DSLGFDLDQP DIMFPECHAS DSRAGKKFQP KVRSHRRKEI SGSSMEQPAT  300
VAAVNSHTTQ PVESVLTMDK PVDPVCPSSP NLDNESNEPS KENEVLLPHD NNLELVSPSS  360
KEFMPKGDMS SKEAYLAGLD SNFGQKPSGV ADSPIEVNSL GLDLDPFADI VLPPAISNAR  420
AGGKFQPRGK ARPRKVTSES NSFAVSGATV EGPASVVSTV SDNLQSAKFI DVGDGRLMDS  480
VYSTLTTMKS MESKEALRND DCTNSGVLLF KVDRSSGLEN SSHLVASDAL HIGDIDRDPH  540
SGLGKSIGEN ADIFSGLEYI HDFVTQSPRT EIPLPASSDG TEEHSRFPAQ ISVNSSAPGA  600
CNEATENVVT CNEAAVEIDN GKPQSDFQEP GSFPDFESPG ILSESAIALE CCTRNTQPKS  660
MVQNGKEIPS TSILPDASPP NTQIDPSESV YIDVGSIPTF PSEDVLDYSS ISFGNFIPAD  720
PTRSEFPVNE ERTNLAETSC SSDLNILHHE DVSTVPAKES SKDRKRKSSS ASYLAQNESV  780
KSARQLRKRT IASQVVDGPE DEAQDSDGFP SEHRNSSIAD GDIDYDYRVD EDNDNEDKVE  840
NTSSSRRASK KSKKPMAEQE KKPVSRRKRK NDAPEQPNQQ SRKKFSHSTR RKSRLKDLLS  900
IPEDEIDYQK MPFKDIILLA GYKEDLAIKE AKASKNSTKK SSTNSLHGEE EDDTVTSEQD  960
GGVADDQSNS LFNCHSFMDK TPTARWSKQD TELFYEGIRQ FGTDLSMIQQ LFPGRTRHQI  1020
KLKYKKEERQ HPLRLSEALS NRAKDHSYFE KVMEQLQQVA AQEERESNRG NSVSLTDDEE  1080
AQLNPETNEE VAKSDEQDED VTVDQDGDPL KYDEDDDDFD IWGSYKSEY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.11G084700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021628026.1	0.0	uncharacterized protein LOC110626433
TrEMBL	A0A2C9UZN3	0.0	A0A2C9UZN3_MANES; Uncharacterized protein
STRING	cassava4.1_000789m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3666	29	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	9e-39	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Manes.11G084700.1.p