PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.11G074500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ERF
Protein Properties Length: 279aa    MW: 30326.1 Da    PI: 4.5411
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.11G074500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.95.8e-193381355
                  AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         + GVr+++ +gr++AeIrdps+   + r++lg+f+taeeAa a+++a+++++g
  Manes.11G074500.1.p 33 FLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDRAARSMRG 81
                         56******.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.4E-343295IPR001471AP2/ERF domain
PROSITE profilePS5103220.7193289IPR001471AP2/ERF domain
CDDcd000183.59E-313288No hitNo description
Gene3DG3DSA:3.30.730.104.3E-293389IPR001471AP2/ERF domain
SuperFamilySSF541715.56E-213390IPR016177DNA-binding domain
PRINTSPR003673.5E-83344IPR001471AP2/ERF domain
PfamPF008476.2E-123581IPR001471AP2/ERF domain
PRINTSPR003673.5E-85571IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MNPSPSKSKK KQATQPQEPS QAAAAAAGGG GRFLGVRRRP WGRYAAEIRD PSTKERHWLG  60
TFDTAEEAAL AYDRAARSMR GSRARTNFVY SDMPAGSSVT SIISPDEQQQ MQALQQQSQQ  120
QQENNFSSSS IFLPPSHQPD PPSIFNNQQD FSSSQCFGFP SMDGEEMWGC SSTTTTYHHE  180
QLPVITNDEL PPLPCDISSS FSSSVDSSGI HNSGYDMTSS GLMGFEDQTI MTNGFESGGP  240
YFGFDGGEYV HSPLFSRMPP VSETVPDGFD LGSSAYFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-203388359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-203088362ATERF1
3gcc_A3e-203088362ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.11G074500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021629036.10.0ethylene-responsive transcription factor LEP-like
TrEMBLA0A2C9V1870.0A0A2C9V187_MANES; Uncharacterized protein
STRINGcassava4.1_024772m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39043161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.15e-35ERF family protein