PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.11G062900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ERF
Protein Properties Length: 312aa    MW: 34040 Da    PI: 9.7164
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.11G062900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.64.2e-20164213356
                  AP2   3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                          y+GVr ++ +grW AeIrd       r r++lg+f+taeeAa+a++aa+++l+g+
  Manes.11G062900.1.p 164 YRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTAEEAARAYDAAARRLRGA 213
                          9*******.**********32....25**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.787163220IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-29163220IPR001471AP2/ERF domain
SMARTSM003802.2E-31163226IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-21163220IPR016177DNA-binding domain
CDDcd000181.22E-15164221No hitNo description
PRINTSPR003671.3E-10164175IPR001471AP2/ERF domain
PfamPF008476.4E-14164212IPR001471AP2/ERF domain
PRINTSPR003671.3E-10186202IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MTLSSVQHQN AMTERKFLPV PFCSDPETSQ ISETFRFLTD ASSFSTPPFG AQYPFSSGFS  60
INHVISSTCC RPVSADFSTV LSQSCISERI PPEVNKKGTD VQTETPPVLD GIAAVVGQHV  120
LFGTNATVNV RNPEPSISQR TGSKTNHEDD SQRKDNVMPL QRTYRGVRKR PWGRWSAEIR  180
DRIGRCRHWL GTFDTAEEAA RAYDAAARRL RGAKARTNFE IPSVLPIPSP TSSGSSTEVR  240
KRNNKTNNGT GRKCAVVTSV AHLFSDISNS NIGYQGKENG TVNNNNVELE LKLGMGIGSN  300
GNRSSPPYMV A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-17162221161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.11G062900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021629044.10.0ethylene-responsive transcription factor ERF084
TrEMBLA0A2C9V0E90.0A0A2C9V0E9_MANES; Uncharacterized protein
STRINGcassava4.1_023728m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130232631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.11e-23ERF family protein