PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.11G029700.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

bHLH

Protein Properties

Length: 412aa MW: 45429.6 Da PI: 6.7326

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.11G029700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.1	6.3e-08	314	354	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+RR++i +++ L++l+P K++ a++L +A +Y+k L Manes.11G029700.1.p 314 ARQRREKISERIRVLQRLVPGG-----SKMDTASMLDEAANYLKFL 354 69****************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.345	305	354	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.19E-14	310	369	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.37E-10	311	359	No hit	No description
SMART	SM00353	6.9E-13	311	360	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.7E-12	313	364	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.6E-5	314	354	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence Send to blast
MDSLVWDDSQ VLTNTASLWN NPPHASPLWS NQENEDSLIA SNSNSGLFGG KMDLTEDIFN 60 QFQELQKLQE ITANPSTTGF CKSNQSRIFD GIPNGKAVGV STAGSLESLD CLLSATNSNT 120 NTSIEDDGIS MIFSDCRNLW NFGASSAASS GESENNTSNA RNKEMHCRVS ELDETVSQSS 180 SDKKISPIKP DSMKRSKNQS ELKACCSNKH QYFDLLQTDC STSEGGFRLI SDNPPKPKRF 240 RSDKLPGSSN INFQQPSSSA SSSIEEVDPE AIAQMKEMIY RAAAFRPVNL GLEVVEKPKR 300 KNIKISTDPQ TVAARQRREK ISERIRVLQR LVPGGSKMDT ASMLDEAANY LKFLRSQVKA 360 LENLGHKLDS VNCPPTNIAF STLPFNNHSF FPMQAHHFSL QNPNHIHHPH S*

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence Send to blast

MDSLVWDDSQ VLTNTASLWN NPPHASPLWS NQENEDSLIA SNSNSGLFGG KMDLTEDIFN  60
QFQELQKLQE ITANPSTTGF CKSNQSRIFD GIPNGKAVGV STAGSLESLD CLLSATNSNT  120
NTSIEDDGIS MIFSDCRNLW NFGASSAASS GESENNTSNA RNKEMHCRVS ELDETVSQSS  180
SDKKISPIKP DSMKRSKNQS ELKACCSNKH QYFDLLQTDC STSEGGFRLI SDNPPKPKRF  240
RSDKLPGSSN INFQQPSSSA SSSIEEVDPE AIAQMKEMIY RAAAFRPVNL GLEVVEKPKR  300
KNIKISTDPQ TVAARQRREK ISERIRVLQR LVPGGSKMDT ASMLDEAANY LKFLRSQVKA  360
LENLGHKLDS VNCPPTNIAF STLPFNNHSF FPMQAHHFSL QNPNHIHHPH S*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.11G029700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021627408.1	0.0	transcription factor bHLH87 isoform X2
Swissprot	Q8S3D2	8e-90	BH087_ARATH; Transcription factor bHLH87
TrEMBL	A0A2C9UXV7	0.0	A0A2C9UXV7_MANES; Uncharacterized protein
STRING	cassava4.1_013453m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4530	32	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	2e-73	bHLH family protein

Link Out ? help Back to Top
Phytozome	Manes.11G029700.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]