PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.11G021500.2.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB_related
Protein Properties Length: 623aa    MW: 68279.6 Da    PI: 6.4675
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.11G021500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.48e-09546594348
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                          +WT  E  +lv++v ++G g+W+ I r        Rt  ++k++w+++l
  Manes.11G021500.2.p 546 AWTLSEVMKLVEGVSRYGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 594
                          7****************************99**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.225539598IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-12541597IPR009057Homeodomain-like
SuperFamilySSF466897.03E-16541600IPR009057Homeodomain-like
SMARTSM007172.9E-9543596IPR001005SANT/Myb domain
CDDcd116601.52E-19545595No hitNo description
PfamPF002497.4E-7546594IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 623 aa     Download sequence    Send to blast
METEVEVEGN DEGKFEEPGF GKIYSSLSSA KQLTDPVVYK LVRVEGDGRL VPATDDEVME  60
VKDLLVDEKS EVCTVADVGQ PIGCISNDRS SPGMLPQLES SEGLSPSENT EVDPDKLNAR  120
LEYIEEMLQK VKEEERLRIA CGSRDYSSAC VIVDSQCSDQ LDKLPAIDEN LQSEIPLQET  180
GPSFAPSLIQ SHMHQSGGVG ECSNAPVLTE GRALTSTTVT TSKPDFSKLN GEICLDNLSI  240
KELHETFKAT FGRETTVKDK QWLKRRIAMG LTNSCDVSAT TFIIKDNKLV NKGKEDGSDN  300
GDGALANDPA TGTTMSGGQQ GLPISHGSQL EDQVVSDKRN RNIGDNSGSE DHHTEQRAAK  360
RVRKPTKRYI EELSEVESKE ASGKLRPIVK NSLLGQMSSN FHTRSARNVS LEGRTVVTRL  420
DSLGGSGIQI PCVSRVRRSR PRKNFMALLK FNPSSMGVTA ELVKKALGAH SFLPDNYENE  480
RAQSAPVQVQ HRFLGVADED RQFLSTGAVG GHHKVLKQVD SSGDSDDNVV TVPTSKGGIR  540
RKHHRAWTLS EVMKLVEGVS RYGAGRWSEI KRLAFASYSY RTSVDLKDKW RNLLKASFAQ  600
IPSDKGVSSL IYNYLHHMQV IA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1436442RRSRPRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.11G021500.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021627953.10.0uncharacterized protein LOC110626403 isoform X2
TrEMBLA0A2C9UXS00.0A0A2C9UXS0_MANES; Uncharacterized protein
STRINGcassava4.1_003191m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.21e-116TRF-like 6