PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.11G020400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | MYB | ||||||||
Protein Properties | Length: 215aa MW: 24675.7 Da PI: 5.7788 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 62.3 | 9.9e-20 | 31 | 78 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l+++++ +G ++Wk Ia+t g++R++k+c++rw++yl Manes.11G020400.1.p 31 KGAWTPEEDRKLAQVIAIHGAKRWKIIAATAGLNRCGKSCRLRWLNYL 78 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.6 | 4.4e-16 | 84 | 129 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l Manes.11G020400.1.p 84 RGNISDQEEDLILRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 129 78999*****************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.992 | 26 | 82 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.83E-29 | 29 | 125 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-15 | 30 | 80 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.0E-18 | 31 | 78 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-24 | 32 | 85 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.71E-11 | 33 | 78 | No hit | No description |
PROSITE profile | PS51294 | 20.918 | 83 | 133 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-15 | 83 | 131 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-14 | 84 | 129 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.2E-25 | 86 | 134 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.66E-10 | 88 | 129 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MDPSTHDESV KREDKPVETM TNIPTKKEVN KGAWTPEEDR KLAQVIAIHG AKRWKIIAAT 60 AGLNRCGKSC RLRWLNYLRP NIKRGNISDQ EEDLILRLHK LLGNRWSLIA GRLPGRTDNE 120 IKNYWNSHLS KKINQKEKQS GASTREESMD GKMTAGKVDI VEVREENMSC NNTREEDSNA 180 TFNVDDFFDF SNEDPLDLEW MNNFLEMDEG FTSM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-29 | 31 | 134 | 7 | 109 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146 or BHLH12/MYC1. Involved in epidermal cell fate specification in roots and hypocotyl. Together with GL3 or BHLH2, promotes the formation of non-hair developing cells (atrichoblasts) et the N position in root epidermis. Regulates stomata spatial distribution in hypocotyls. Binds to the WER-binding sites (WBS) promoter regions and activates the transcription of target genes such as GL2 and of CPC. {ECO:0000269|PubMed:10589676, ECO:0000269|PubMed:11585796, ECO:0000269|PubMed:14627722, ECO:0000269|PubMed:15361138, ECO:0000269|PubMed:15795220, ECO:0000269|PubMed:16207757}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.11G020400.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Transcriptional activation correlates with reduced histone acetylation on H3 and H4 mediated by HDA18 in N cells. Repressed by CPC in hair cells (H position). {ECO:0000269|PubMed:11910008, ECO:0000269|PubMed:16176989}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM034681 | 1e-44 | KM034681.1 Jatropha curcas clone JcMYB061 MYB family protein gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021626757.1 | 1e-159 | transcription factor MYB114-like | ||||
Swissprot | Q9SEI0 | 3e-51 | WER_ARATH; Transcription factor WER | ||||
TrEMBL | A0A2C9UYT2 | 1e-157 | A0A2C9UYT2_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_030774m | 1e-143 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2148 | 32 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14750.1 | 1e-53 | myb domain protein 66 |
Link Out ? help Back to Top | |
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Phytozome | Manes.11G020400.1.p |