PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.11G020300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family AP2
Protein Properties Length: 558aa    MW: 61941 Da    PI: 7.0049
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.11G020300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.55.7e-12255311155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV++++++gr++A+++d  + ++  ++ k  + g ++ +e+Aa+a++ a++k++g
  Manes.11G020300.1.p 255 SQYRGVTRHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 311
                          78*******************433.44555535555.779999**************98 PP
2AP248.12.8e-15354405155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Manes.11G020300.1.p 354 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 405
                          78****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.8E-9255311IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-15255321IPR016177DNA-binding domain
CDDcd000186.25E-19255321No hitNo description
PROSITE profilePS5103217.332256319IPR001471AP2/ERF domain
SMARTSM003804.8E-23256325IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-12256320IPR001471AP2/ERF domain
PRINTSPR003671.2E-6257268IPR001471AP2/ERF domain
PfamPF008475.6E-10354405IPR001471AP2/ERF domain
CDDcd000185.30E-25354415No hitNo description
SuperFamilySSF541719.15E-18354415IPR016177DNA-binding domain
SMARTSM003803.6E-34355419IPR001471AP2/ERF domain
PROSITE profilePS5103219.006355413IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-18355413IPR001471AP2/ERF domain
PRINTSPR003671.2E-6395415IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MSKWLGFSLT PHLRIDQGFG RDEQGGFSSV MPLRSDGSLC VVDPFRRSSN ASQDWRYENS  60
IDGTSASEEG PKLEDFLGCY SNSPSDETKF YCQEDHTQNQ SNGINVNVVP SINNNGDIDT  120
RDNLTNPPHL IQSYHHYNEN PHILIPSDNL QHCDPNPSHS HNNRMYSLPF ESGSSVSGFK  180
SWLRQTPYSG DKSSSEANNC NFQPLSLTMS PSSQNELAAV SPVQAVDNRK RPIGKSVARE  240
PIPRKSIDTF GQRTSQYRGV TRHRWTGRYE AHLWDNSCRK EGQTRKGRQG GYDKEEKAAR  300
AYDLAALKYW GPTTHINFPL STYEKELEEM KHMTRQEFVA NLRRKSSGFS RGASVYRGVT  360
RHHQHGRWQA RIGRVAGNKD LYLGTFSTQE EAAEAYDIAA IKFRGTSAVT NFDISRYDVK  420
RICSSSTLIA GDLAKRSPKD LAPSTLEDNN SCASSTSPQR LLAMANCEAS DELADTMWNS  480
NSDEHQQRPS ASNANNPVSS KCSVGLAGEF STGVGDYTQG FSSLEGSKYE DGNNGSNDRI  540
SGLGLVHPVP MFALWNE*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.11G020300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021626755.10.0AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ1PFE11e-142AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A2C9UZL30.0A0A2C9UZL3_MANES; Uncharacterized protein
STRINGcassava4.1_034000m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102743137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-138AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]