PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.11G016000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C3H
Protein Properties Length: 540aa    MW: 62242.1 Da    PI: 9.273
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.11G016000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.98.1e-09515538327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          + lC+f+a+ G C yG++CkF H+p
  Manes.11G016000.1.p 515 EQLCKFYAQ-GRCYYGENCKFLHDP 538
                          679******.*************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.720.301.3E-895140IPR003034SAP domain
SuperFamilySSF689065.68E-795140No hitNo description
PROSITE profilePS508009.746106140IPR003034SAP domain
PfamPF020372.0E-8106139IPR003034SAP domain
PROSITE profilePS5010316.258512539IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-4514538IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-6514538IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-7514537IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-6515538IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MANFEQQKPQ HHRDLEEEEE EDYSEGGGSD AEYDSDMDPS YSVLEESTRC KLAKLSIKKK  60
SNFRNGKNLD MDVDVEVGPE EAEMNVGEID EKSFEQVQEI IGVGKLEKLK VEQCKVYLRK  120
NGLRLTGKKD ILIQRIREHQ EILNEGGEKK YPASSFVLDC KGDACMGDVV MFEQNVYELY  180
NIASRSASGP PCGTRIVAGR IVKESYGAAK QQHTFTIEVL WSKGEKPLPP LHPLLIKGRN  240
LYKLKTLRQR WENEEERRKI LIEKHSRGSL ARHARETRIQ EKERRKVLRE NRTLTKEDRN  300
RRQSQISSTL KANQEIRGRQ SGSSINLQKA APEPQVSGLS VDSRKMTIQS HGTMESRPLQ  360
PVVQPQKSRS SIDMLKMVGR PHWLGIQHQR SDTLADSFKQ SNQPPQWSGF SVETEKQPFQ  420
PKLQTYRREN GNSHGVPHNL VDHIGTREVA QHNIEKVGSW FSNFYMNDDH HIFSKQPNKI  480
GINRLSETHH QRQPLTSTHH HRAMYLVNKH GYQQEQLCKF YAQGRCYYGE NCKFLHDPR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.11G016000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021627625.10.0zinc finger CCCH domain-containing protein 62-like
TrEMBLA0A2C9UXF70.0A0A2C9UXF7_MANES; Uncharacterized protein
STRINGcassava4.1_032530m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116522224