PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.11G015400.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

Trihelix

Protein Properties

Length: 363aa MW: 39807.7 Da PI: 9.9415

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.11G015400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	46.7	8.1e-15	68	155	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +Li+a e+ +l+rg+lk+++W+ev++ + + ++ +qCk++++ ++k+yk +k+ + + s++p+f++l+ Manes.11G015400.1.p 68 CWSEGATAVLIDAWGERYLELSRGNLKQKHWKEVADIVssreDYMKAAKTDIQCKNRIDTVKKKYKLEKAKIAAG--GGPSKWPFFERLD 155 7***********************************85333344567889**************99997..67779****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.5E-26	66	157	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MEDDEEIQSH ASAATGSPSP SPPNGRITVT VAAAPPSSHH LQQQNDNSLS LTLPIQQPKT 60 NGGGREDCWS EGATAVLIDA WGERYLELSR GNLKQKHWKE VADIVSSRED YMKAAKTDIQ 120 CKNRIDTVKK KYKLEKAKIA AGGGPSKWPF FERLDQLIGP AAKIPVTATA AAASLSSKVP 180 VGIPVGIRSG GASGSNQYQF PQGKAQMKSN PVTKNQNVKA QLRKRAQVET ESSSEEEENF 240 PDSDDSLPQE KKPRGVQRGV NTKGVKERKG WGNSIRMLTQ AILKFGEAYE QAESAKLQQV 300 VEMEKTRMKF AKELELQRMQ FFMKTQMEIS QLKRGRRAGN GSNHHISGNS IIHNNDNSDS 360 DN*

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MEDDEEIQSH ASAATGSPSP SPPNGRITVT VAAAPPSSHH LQQQNDNSLS LTLPIQQPKT  60
NGGGREDCWS EGATAVLIDA WGERYLELSR GNLKQKHWKE VADIVSSRED YMKAAKTDIQ  120
CKNRIDTVKK KYKLEKAKIA AGGGPSKWPF FERLDQLIGP AAKIPVTATA AAASLSSKVP  180
VGIPVGIRSG GASGSNQYQF PQGKAQMKSN PVTKNQNVKA QLRKRAQVET ESSSEEEENF  240
PDSDDSLPQE KKPRGVQRGV NTKGVKERKG WGNSIRMLTQ AILKFGEAYE QAESAKLQQV  300
VEMEKTRMKF AKELELQRMQ FFMKTQMEIS QLKRGRRAGN GSNHHISGNS IIHNNDNSDS  360
DN*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269\|PubMed:21330492}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.11G015400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021628841.1	0.0	trihelix transcription factor ASIL2
Swissprot	Q9LJG8	1e-104	ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBL	A0A2C9UYM3	0.0	A0A2C9UYM3_MANES; Uncharacterized protein
STRING	cassava4.1_009403m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7919	30	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14180.1	6e-57	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Manes.11G015400.1.p