PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.11G013500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 203aa MW: 22819.2 Da PI: 4.9171 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 75.1 | 5.4e-24 | 23 | 70 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ++e + r+vtfskR+ngi+KKA ELS+LC+a+vavi+fs++gk++ y Manes.11G013500.1.p 23 KVEKENSRYVTFSKRKNGIFKKATELSTLCGADVAVILFSEHGKVFSY 70 6788899**************************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 26.717 | 14 | 74 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.3E-31 | 14 | 73 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 7.90E-35 | 15 | 83 | No hit | No description |
SuperFamily | SSF55455 | 1.96E-28 | 15 | 86 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-21 | 16 | 36 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-24 | 23 | 70 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-21 | 36 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-21 | 51 | 72 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MDATTDQRPL KRTRGRQKIE IKKVEKENSR YVTFSKRKNG IFKKATELST LCGADVAVIL 60 FSEHGKVFSY GNPNVEKVLD QYLAETEEGD DNSCVLESGS NGGTLTQTLQ EQDYEKSLRR 120 NNNVKKGEFW WDLAIDNMEK EEVEGFKESL EELKKNAMAR IEDQAAQNAV GESSTINQFI 180 DHNGVRNSST TTYGAGFNNE FL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6bz1_A | 4e-18 | 15 | 98 | 2 | 87 | MEF2 CHIMERA |
6bz1_B | 4e-18 | 15 | 98 | 2 | 87 | MEF2 CHIMERA |
6bz1_C | 4e-18 | 15 | 98 | 2 | 87 | MEF2 CHIMERA |
6bz1_D | 4e-18 | 15 | 98 | 2 | 87 | MEF2 CHIMERA |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.11G013500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021600100.1 | 1e-113 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A2C9UYK4 | 1e-147 | A0A2C9UYK4_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_033915m | 1e-148 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 6e-31 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | Manes.11G013500.1.p |