PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.11G009900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | MYB | ||||||||
Protein Properties | Length: 557aa MW: 61088.6 Da PI: 4.8449 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.4 | 3.3e-18 | 39 | 86 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ede+l+++vk++G g+W+++ ++ g+ R++k+c++rw ++l Manes.11G009900.1.p 39 KGPWTSAEDEILIEYVKKHGEGNWNAVQKHSGLFRCGKSCRLRWANHL 86 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 53.6 | 5e-17 | 92 | 135 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE++l++++++++G++ W++ a++++ gRt++++k++w++ Manes.11G009900.1.p 92 KGSFTQEEEQLIIELHAKMGNK-WARMAAHLP-GRTDNEIKNYWNT 135 799*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.401 | 34 | 86 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.09E-30 | 38 | 133 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.1E-16 | 38 | 88 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-24 | 40 | 93 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.08E-12 | 41 | 86 | No hit | No description |
Pfam | PF13921 | 9.3E-17 | 42 | 102 | No hit | No description |
PROSITE profile | PS51294 | 26.819 | 87 | 141 | IPR017930 | Myb domain |
SMART | SM00717 | 1.8E-17 | 91 | 139 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-26 | 94 | 140 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.00E-12 | 94 | 135 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009789 | Biological Process | positive regulation of abscisic acid-activated signaling pathway | ||||
GO:0043068 | Biological Process | positive regulation of programmed cell death | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0045926 | Biological Process | negative regulation of growth | ||||
GO:0048235 | Biological Process | pollen sperm cell differentiation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 557 aa Download sequence Send to blast |
MRHTKNESDD GVLSKDQTES LLAEEGSCGG SANGLMLKKG PWTSAEDEIL IEYVKKHGEG 60 NWNAVQKHSG LFRCGKSCRL RWANHLRPNL KKGSFTQEEE QLIIELHAKM GNKWARMAAH 120 LPGRTDNEIK NYWNTRIKRR QRAGLPLYPP EVSLQASYES QLSLNISGIY SGDKDHQDLL 180 QTNSYEIPEV IFDSLKANHG ISSYVPELPV ITASSMLMRG LSSSQYSNFM SPTVHCQKHL 240 RESTTLIPGY SGSGKTEFTL SDQFQHNSCD RVAQSFGLSF PFHLDPTNKN PESFGGNQVS 300 HILANGNFSA SKPNYGFVKM ELPSFQYPEN DLGSWGISPP RLLEIIDTLN QSTPIGTVES 360 SPHNSGLLDA LLHESETLSS TKNHSSDKSS NSSIVTHGEL AESSALNICN TEWEEYGDTL 420 SSLGHTTTSL FGECTPISTC GSSMDEPSAT ETLTGSNVKL TAVDQARSSE REKETTTRLD 480 ITHPDALLAS DWLEDGSGYV EDQDFMLDNI APLLSDDFSS DFEQMSTGAS TSNQGWGLGS 540 CAWNSMPAVC QMSELT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-33 | 37 | 140 | 5 | 107 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00490 | DAP | Transfer from AT5G06100 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.11G009900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021628984.1 | 0.0 | transcription factor MYB33-like isoform X2 | ||||
TrEMBL | A0A251JR20 | 0.0 | A0A251JR20_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_024052m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2047 | 34 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06100.3 | 1e-139 | myb domain protein 33 |
Link Out ? help Back to Top | |
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Phytozome | Manes.11G009900.1.p |