PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.11G008900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 275aa    MW: 30028.9 Da    PI: 9.6469
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.11G008900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.000247799123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C+ C++ Fs++  L  H++ H
  Manes.11G008900.1.p 77 FSCNFCKRDFSTSQALGGHQNAH 99
                         89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.7E-464103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.58E-673104No hitNo description
PROSITE profilePS5015711.44877104IPR007087Zinc finger, C2H2
PROSITE patternPS0002807999IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MKMKMKEKSE PTTAVTHESS SRVLLDLKLS SDDSIRGSKL ELNLFTPVNT NNESTDETMH  60
GEKRSDHNNN STQSRVFSCN FCKRDFSTSQ ALGGHQNAHK QERALAKRRQ GMDLGAFGNY  120
PYSYYPYSSF SSHHNNPLYG SLSRSLGVRM DSLIHKSSAS YPWWSSGGAY RFSHGGWSRQ  180
GLVNSQQPSI DRLRMESLNA VNNSYGGGFG TTAGSSSSPR FDENKNNSSV QNLGASPSNI  240
NSLIGSSTGD HLRRADPATS NQVDASGIDL SLKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.11G008900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021628369.10.0zinc finger protein 3-like
TrEMBLA0A2C9UYG10.0A0A2C9UYG1_MANES; Uncharacterized protein
STRINGcassava4.1_028941m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18223074
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.18e-21C2H2 family protein