PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.11G006200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family Trihelix
Protein Properties Length: 354aa    MW: 38998.2 Da    PI: 10.1566
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.11G006200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix50.94.1e-1648131186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          +W++  v  L+ea+++++   +r+klk+++We+v++++ ++  +++spk   qCk+k+e+++kry+ + +++        s++p++ +l+
  Manes.11G006200.1.p  48 EWSEGAVSSLLEAYESKWVLRNRAKLKGHDWEDVARYVsSRANYTKSPKtqtQCKNKIESMKKRYRSESATADA------SSWPLYPRLD 131
                          5*************************************855666666543339***************999986......4699999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.8E-1946131No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MDKETNQESP SLLSNNNSIK EEPSRKQLPA TGSSGFAAAG GDRLKRDEWS EGAVSSLLEA  60
YESKWVLRNR AKLKGHDWED VARYVSSRAN YTKSPKTQTQ CKNKIESMKK RYRSESATAD  120
ASSWPLYPRL DLLLRGSAAA TAAAAAAAVP PPQPPPQQQP SPLQVSNHSP PLMLLETSHL  180
LLPQPNPQPP APQPPAPPPP PPPPAIVTAQ NSHGSNGVDR GAKEDGVGTK LSDHVSDKNA  240
MDTDSSTPAL YSDKEKLRFK KMKMKMDKKK RRRKEEWEIA DSIRWLAEVV VRSEQARMET  300
MREVEKMRIE AEAKRGEMDL KRTEIIANTQ LEIAKLFAGV GKGVDSSLRI GRN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1259270KKMKMKMDKKKR
2267272KKKRRR
3267273KKKRRRK
4268273KKRRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.11G006200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021628947.10.0trihelix transcription factor ASIL2-like isoform X1
TrEMBLA0A2C9UX660.0A0A2C9UX66_MANES; Uncharacterized protein
STRINGcassava4.1_011546m1e-179(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49943350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.13e-58sequence-specific DNA binding transcription factors