PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.10G153300.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

C2H2

Protein Properties

Length: 416aa MW: 46529.1 Da PI: 9.538

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.10G153300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.3	0.0005	364	383	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ Cgk+F ++ L+ H++++ Manes.10G153300.1.p 364 CSLCGKTF-KPEKLHIHMKSC 383 ******.********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06136	4.2E-45	18	313	IPR010369	Protein of unknown function DUF966

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence Send to blast
MEASKPIPKV GGEVRRLHII YFLSHMGRIE HPHLIRVHHL NRNGVYLRDV KRWMADLRGK 60 EMPEAFSWSY KRRYKNGYVW QDLLDDDLIT PISDNEYVLK GSEIFPTTHF DTTGSGENRA 120 SIFKNDKHVE VGNEDKQEEQ ERSSTKEDNQ ISPDTSIDIS MKTSSEIYHE SPVFSSERST 180 LTQDSLKRPD DSHEEEMEKF ESLSSSSFYS NLLGKKKEKK KNKKKTNSEA SSHNEEDIDR 240 SSSSIEKMGS PSSSSSPQSQ SQFAKSKSYS SEASKMLRNL MTCGAADTND AALITINKSS 300 LRKEEICKGG SSRALGTLWN QQQQCNASSR RSFDGMKDSK QHKSGFNNPK GVAAAYKPVG 360 APICSLCGKT FKPEKLHIHM KSCKGKRSYA KTAAASVGKN PSPSMNSMNQ LMAIS*

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence Send to blast

MEASKPIPKV GGEVRRLHII YFLSHMGRIE HPHLIRVHHL NRNGVYLRDV KRWMADLRGK  60
EMPEAFSWSY KRRYKNGYVW QDLLDDDLIT PISDNEYVLK GSEIFPTTHF DTTGSGENRA  120
SIFKNDKHVE VGNEDKQEEQ ERSSTKEDNQ ISPDTSIDIS MKTSSEIYHE SPVFSSERST  180
LTQDSLKRPD DSHEEEMEKF ESLSSSSFYS NLLGKKKEKK KNKKKTNSEA SSHNEEDIDR  240
SSSSIEKMGS PSSSSSPQSQ SQFAKSKSYS SEASKMLRNL MTCGAADTND AALITINKSS  300
LRKEEICKGG SSRALGTLWN QQQQCNASSR RSFDGMKDSK QHKSGFNNPK GVAAAYKPVG  360
APICSLCGKT FKPEKLHIHM KSCKGKRSYA KTAAASVGKN PSPSMNSMNQ LMAIS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	215	223	KKEKKKNKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.10G153300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021625151.1	0.0	uncharacterized protein LOC110624365
TrEMBL	A0A2C9V6J3	0.0	A0A2C9V6J3_MANES; Uncharacterized protein
STRING	cassava4.1_025631m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8378	16	20

Link Out ? help Back to Top
Phytozome	Manes.10G153300.1.p