PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.10G150800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB_related
Protein Properties Length: 638aa    MW: 71380.5 Da    PI: 10.0032
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.10G150800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.93.1e-102373346
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqk 46
                          W t++++ll++avk++G ++W+++a +++       +  t+++c+ ++++
  Manes.10G150800.1.p 23 TWGTWDELLLACAVKRHGFKNWDSVAMEVQtksslphLLTTAENCQQKYHD 73
                         7*****************************999999988899999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.97E-51885IPR009057Homeodomain-like
SMARTSM007176.5E-52077IPR001005SANT/Myb domain
PfamPF002493.6E-92374IPR001005SANT/Myb domain
CDDcd001677.24E-62374No hitNo description
Gene3DG3DSA:1.20.920.109.3E-14269390IPR001487Bromodomain
SuperFamilySSF473704.32E-16280390IPR001487Bromodomain
SMARTSM002971.8E-8282387IPR001487Bromodomain
CDDcd043693.44E-12292382No hitNo description
PROSITE profilePS5001411.616297368IPR001487Bromodomain
PfamPF004392.3E-9299366IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 638 aa     Download sequence    Send to blast
MEKHSQNQSH SHHLTHTHNP NPTWGTWDEL LLACAVKRHG FKNWDSVAME VQTKSSLPHL  60
LTTAENCQQK YHDLHRRFTT TTTCNEQDNI NNNNNNTADK VVNIPWLEEL RKLRVAELKQ  120
EVQRYDVSIL SLQLKVKRLE EERDKSLQSN QNDGGIPDLE QEASQNDKKD EPEKKDSVSG  180
GEESDRENRS VNESNSTGSE EKTAEKDGVK LEDEPVREGP GEAAPVLSVS NSKPVGEESH  240
ELGDSVTQLS SEVQSSASLG RKRKRKERKR GEEIGGDGIK GTTEKSEPLV GLIQMIRAHR  300
HGSLFESRLE IQETDAYKNI VRQHLDLETI QTKLEQGSYS SSNLAFYRDL LLLFNNAIVF  360
FPKSSTESFA AYDLRLLVSN EMKKETQKSE FTVASQNIVP QPKSELERSN SLLKGSAPIV  420
VCRKRSSLSM KPSPSSFGQK IELQQQQQQQ QHSNDNELPS DPKPPIVEQS TLKIESKEKP  480
ATGTRSSRRS NKNLNKGTPS KKQNASPTIK ADAEKSEAPK TDKKKTEALA LDKKRSAVDF  540
LKRIKKNSPV ETSKNTRGAV NGGGDHKTDG AMKVEKGKER ILRRNNDEKQ VEESSPSKRN  600
VGRPSKKGVE TSRVSGKRGR EGGGKEAVKR PTKRSRR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1260265RKRKRK
2260266RKRKRKE
3260268RKRKRKERK
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.10G150800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021626454.10.0uncharacterized protein LOC110625191
TrEMBLA0A2C9V7S80.0A0A2C9V7S8_MANES; Uncharacterized protein
STRINGXP_002512156.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18702972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.11e-112DNA-binding bromodomain-containing protein