PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.10G144400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 336aa    MW: 38139.6 Da    PI: 7.5983
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.10G144400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.13.5e-06173192120
                          EEETTTTEEESSHHHHHHHH CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                          ++Cp C k+F+r  nL+ H+
  Manes.10G144400.1.p 173 FSCPVCFKTFNRYNNLQMHM 192
                          89*****************9 PP
2zf-C2H213.60.0002257279123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          + C +C+k+F  k + ++H +++
  Manes.10G144400.1.p 257 FMCRKCSKPFAVKGDWRTHEKNC 279
                          89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.68E-5169195No hitNo description
Gene3DG3DSA:3.30.160.601.0E-5173192IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.21173195IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.159173200IPR007087Zinc finger, C2H2
PROSITE patternPS000280175195IPR007087Zinc finger, C2H2
SuperFamilySSF576671.54E-5241277No hitNo description
Gene3DG3DSA:3.30.160.605.0E-4244277IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355110257277IPR015880Zinc finger, C2H2-like
SMARTSM00355150283306IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MADPCSNLFN GWFNFIPIHS NYTSVFTSYS NPPPYNFNLY SNNHLFNNKS PIQYQTYHPP  60
PPPQKEAPPP LIEYLTPPRQ QEEISHESSS NNSMEDDKNM NKKDADDDDD HATVALHIGL  120
PSHSSNLGSR VFSHPSTEEG SSAVSEGYPL QKLSKGQYWI PTPSQILIGP TQFSCPVCFK  180
TFNRYNNLQM HMWGHGSQYR KGPDSLRGTQ PTGMLRLPCY CCAPGCKHNI DHPRARPLKD  240
FRTLQTHYKR KHGIKPFMCR KCSKPFAVKG DWRTHEKNCG KIWYCICGSD FKHKRSLKDH  300
IKAFGHGHAA VGIDNSFEED DDLASELEHE EESSP*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.10G144400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021625505.10.0zinc finger protein WIP2-like
SwissprotQ9SVY11e-119ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A2C9V6A20.0A0A2C9V6A2_MANES; Uncharacterized protein
STRINGcassava4.1_011448m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-116C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]