PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.10G132800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family WRKY
Protein Properties Length: 515aa    MW: 57297.1 Da    PI: 4.7926
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.10G132800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.82.9e-30260319159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+
  Manes.10G132800.1.p 260 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILITTYEGTHNHP 319
                          58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-32245321IPR003657WRKY domain
SuperFamilySSF1182901.31E-27253321IPR003657WRKY domain
PROSITE profilePS5081128.988255321IPR003657WRKY domain
SMARTSM007743.2E-37260320IPR003657WRKY domain
PfamPF031064.1E-27261319IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MGREEKKMEI DLSLQIDTED IEEEEEEEEE EVQEVEENGE EDEEDLQEIN ENEATATTAT  60
TGGEVVDDSS VELSLQDNNK TEELSALQME MNRMKEENKV LRRVVEKTMK DYHDLQMKFA  120
VIQQNTHKDP HIFLPLNGDD KRAVQEPIGS VPKFLDSNNQ RSLEPFLPKD NDRIIEEKEL  180
SLSLRLQTDY SDHHHHQQER EEDRKEENKE ENGNCSWVPS DNNKLQKTDH HLAGITTHAP  240
TPPNRKARVS VRARCQTATM NDGCQWRKYG QKIAKGNPCP RAYYRCTVAP GCPVRKQVQR  300
CLEDMSILIT TYEGTHNHPL PVGATAMAST ASAAASFMLL DSSNPLSNGF HNFTQSSSLP  360
YQGGSMGPHM FYPHSSPFRS INPNDPSKGI VLDLTNDTPE RFSLPISSSS SSPALPLFSW  420
MQNKSSSSSS HQNNGSNNEN VTTIASDPNF RVAVAAAITS LINKEKGTHH AMESPSVPNK  480
EGEGGSSSSR NWVLESLSAA AGKPIRNSSP LENL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-22247323176WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.10G132800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8276230.0KT827623.1 Manihot esculenta WRKY transcription factor 48 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021626604.10.0probable WRKY transcription factor 9 isoform X2
TrEMBLA0A2C9V7670.0A0A2C9V767_MANES; Uncharacterized protein
STRINGcassava4.1_033113m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93203141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.12e-69WRKY DNA-binding protein 9
Publications ? help Back to Top
  1. Wei Y, et al.
    Genome-Wide Identification and Expression Analysis of the WRKY Gene Family in Cassava.
    Front Plant Sci, 2016. 7: p. 25
    [PMID:26904033]