PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.10G124900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | B3 | ||||||||
Protein Properties | Length: 107aa MW: 12016.8 Da PI: 6.5088 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 34.1 | 4.8e-11 | 4 | 101 | 1 | 92 |
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFk 83 f k+l +v ++ l +p + +++ +++ + +++ + d +g+ W++ + k+++ v+++GW eF+ +L +g +++F+ Manes.10G124900.1.p 4 FSKIL--TSVDINKGLEIPHDRCDDVlaeLLITGQRMEILVADMQGNPWKFVCFT-KSGNNqlpnPVFKTGWLEFAGHWNLAAGTTITFY 90 56666..444555569*******9999997788899*****************44.4444447889***********************9 PP E-.SS.SEE.. CS B3 84 ld.gr.sefel 92 + ++ +++++ Manes.10G124900.1.p 91 KEiDQaTGAQY 101 33233355555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 9.3E-10 | 3 | 94 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.64E-9 | 3 | 106 | No hit | No description |
SuperFamily | SSF101936 | 9.42E-10 | 3 | 91 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.3E-8 | 4 | 101 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 107 aa Download sequence Send to blast |
MEIFSKILTS VDINKGLEIP HDRCDDVLAE LLITGQRMEI LVADMQGNPW KFVCFTKSGN 60 NQLPNPVFKT GWLEFAGHWN LAAGTTITFY KEIDQATGAQ YKIRVR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.10G124900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021625663.1 | 9e-76 | uncharacterized protein LOC110624707 | ||||
TrEMBL | A0A2C9V6Z6 | 2e-74 | A0A2C9V6Z6_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_022215m | 5e-69 | (Manihot esculenta) |
Link Out ? help Back to Top | |
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Phytozome | Manes.10G124900.1.p |