PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.10G124700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | B3 | ||||||||
Protein Properties | Length: 120aa MW: 13518.5 Da PI: 5.121 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 36.1 | 1.2e-11 | 14 | 86 | 11 | 83 |
HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFk 83 +s+ l++p + + ++ s ++ + d+sg++W + +++ r+ s + +l+ GW eFv+ ++L ++D v+F Manes.10G124700.1.p 14 IESC-LSFPTSSLGPLPFQEGHSLDMNVHDQSGQEWIFSCTIqRNDSVGQFLSVGWLEFVRHKNLAVNDEVIFV 86 4444.77777777666667778899***************885666667************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd10017 | 1.64E-8 | 4 | 85 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 4.2E-10 | 8 | 89 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 3.3E-9 | 18 | 86 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.16E-8 | 31 | 87 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 120 aa Download sequence Send to blast |
MAILITKLLS QADIESCLSF PTSSLGPLPF QEGHSLDMNV HDQSGQEWIF SCTIQRNDSV 60 GQFLSVGWLE FVRHKNLAVN DEVIFVEEAL ENQAVRSCRI KIQVKRKIRL FGNDIWADV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.10G124700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011002451.1 | 9e-51 | PREDICTED: uncharacterized protein LOC105109425 | ||||
TrEMBL | A0A2C9V7Q9 | 2e-82 | A0A2C9V7Q9_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_033446m | 3e-83 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13182 | 5 | 19 |
Link Out ? help Back to Top | |
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Phytozome | Manes.10G124700.1.p |