PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.10G124600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | B3 | ||||||||
Protein Properties | Length: 106aa MW: 11944.1 Da PI: 10.5245 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 35.2 | 2.3e-11 | 4 | 99 | 1 | 94 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEE..E-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFk..ldgr 87 f kvlt+sd l++ l++p + ++++ +k ++ l ++d g W++++++ + s+ +v++ +W +Fv++++Lk gD++v++ +d++ Manes.10G124600.1.p 4 FSKVLTSSDILRR--LSMPENTLKAFpPAQKGHEIILPVKDDAGILWSFRCRIpaIGFSKPVVFG-NWFKFVRSKDLKPGDTIVLYkeMDKS 92 7899988888865..9*******9999777788999***************98855555557777.*******************9433333 PP SEE..EE CS B3 88 sefelvv 94 s++++++ Manes.10G124600.1.p 93 SGAQYKI 99 5555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 8.966 | 2 | 105 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.2E-14 | 3 | 92 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.67E-12 | 3 | 87 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.53E-19 | 3 | 103 | No hit | No description |
Pfam | PF02362 | 1.6E-9 | 4 | 100 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 106 aa Download sequence Send to blast |
MAIFSKVLTS SDILRRLSMP ENTLKAFPPA QKGHEIILPV KDDAGILWSF RCRIPAIGFS 60 KPVVFGNWFK FVRSKDLKPG DTIVLYKEMD KSSGAQYKIE VKKRD* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.10G124600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2C9V5L8 | 7e-71 | A0A2C9V5L8_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_023649m | 1e-71 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13561 | 5 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01500.1 | 1e-07 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.10G124600.1.p |