PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.10G124500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | B3 | ||||||||
Protein Properties | Length: 129aa MW: 14810.2 Da PI: 10.1986 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 37.8 | 3.4e-12 | 4 | 99 | 1 | 94 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkld.gr. 87 f k+lt+sd l++ l++p + ++++ +k ++ l ++d sg++W++++++ + s+ +v++ +W +Fv++++Lk D++v++ + ++ Manes.10G124500.1.p 4 FSKILTSSDILRR--LSMPENTIKAFpPAQKGHEIILHVKDDSGNVWSFRCRIpaIGFSKPVVFG-NWFKFVRSKDLKPSDTIVLYKEmDEs 92 7789988888765..9*******999*777888999***************98855555557777.*******************9442333 PP SEE..EE CS B3 88 sefelvv 94 s++++++ Manes.10G124500.1.p 93 SGAQYKI 99 5555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 8.91 | 2 | 105 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.34E-12 | 3 | 88 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.79E-18 | 3 | 103 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.1E-14 | 3 | 92 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 5.8E-10 | 4 | 100 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0057 | 4 | 105 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 129 aa Download sequence Send to blast |
MAIFSKILTS SDILRRLSMP ENTIKAFPPA QKGHEIILHV KDDSGNVWSF RCRIPAIGFS 60 KPVVFGNWFK FVRSKDLKPS DTIVLYKEMD ESSGAQYKIE VKKRDQVIRK DTVTCKNTLV 120 INHHYHYL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.10G124500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017970335.1 | 3e-27 | PREDICTED: AP2/ERF and B3 domain-containing transcription repressor RAV2 | ||||
TrEMBL | A0A2C9V771 | 9e-91 | A0A2C9V771_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_024702m | 3e-73 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13561 | 5 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01500.1 | 7e-07 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.10G124500.1.p |