PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.10G122700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | B3 | ||||||||
Protein Properties | Length: 115aa MW: 13585 Da PI: 10.7147 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 32.3 | 1.7e-10 | 4 | 91 | 1 | 89 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldg 86 f+k+l s++ ++rl +p +f++ + +g++ +l+++ +++++ ++++ rk + + vltkGW eFv+ +Lk+gD +v++ + Manes.10G122700.1.p 4 FKKEL--SSTDINKRLAVPTRFFQLIrprfKGNHFL--DLKVKY-KNQKMGLRCCRRKEGTHpkPVLTKGWVEFVRREKLKAGDRIVLEEE- 89 56666..66666678********8778877555433..444433.56888999965555555889************************33. PP SSE CS B3 87 rse 89 +e Manes.10G122700.1.p 90 -DE 91 .33 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.0E-13 | 3 | 91 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.35E-9 | 3 | 102 | No hit | No description |
SuperFamily | SSF101936 | 6.28E-11 | 3 | 93 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.0035 | 4 | 106 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.9E-7 | 4 | 92 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 115 aa Download sequence Send to blast |
MEYFKKELSS TDINKRLAVP TRFFQLIRPR FKGNHFLDLK VKYKNQKMGL RCCRRKEGTH 60 PKPVLTKGWV EFVRREKLKA GDRIVLEEED EATAGVEFRI EVQKKPFRLF GKDI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.10G122700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2C9V6X4 | 2e-77 | A0A2C9V6X4_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_027733m | 3e-78 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12594 | 4 | 14 |
Link Out ? help Back to Top | |
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Phytozome | Manes.10G122700.1.p |