PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.10G121400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | B3 | ||||||||
Protein Properties | Length: 94aa MW: 10581.1 Da PI: 8.0594 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 34.9 | 2.7e-11 | 5 | 89 | 2 | 93 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE. CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefe 91 k+l +v ++ l +p + +++ +++ + d +g++W++ ++ + + ++ v+++GW eF+ +L +g +++F+ d ++ ++++ Manes.10G121400.1.p 5 SKIL--TSVDINKGLEIPHDRCDDR-------MKILVADVEGNTWNFVCCTKSGNKQPVFKNGWLEFAGHWNLAAGTTITFYKDiDQaTGAQ 87 5555..3344444588888888333.......579**************88777788*************************4433335555 PP .E CS B3 92 lv 93 ++ Manes.10G121400.1.p 88 YK 89 55 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.2E-9 | 3 | 81 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.29E-11 | 3 | 79 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.40E-12 | 3 | 93 | No hit | No description |
Pfam | PF02362 | 2.2E-8 | 17 | 88 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 94 aa Download sequence Send to blast |
MEIFSKILTS VDINKGLEIP HDRCDDRMKI LVADVEGNTW NFVCCTKSGN KQPVFKNGWL 60 EFAGHWNLAA GTTITFYKDI DQATGAQYKI RVR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.10G121400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021625663.1 | 2e-53 | uncharacterized protein LOC110624707 | ||||
TrEMBL | A0A2C9V6U2 | 5e-64 | A0A2C9V6U2_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_028150m | 2e-57 | (Manihot esculenta) |
Link Out ? help Back to Top | |
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Phytozome | Manes.10G121400.1.p |