PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.10G121200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family B3
Protein Properties Length: 111aa    MW: 13171.2 Da    PI: 10.0508
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.10G121200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.28.9e-1124843996
                         EETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                   B3 39 edesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                         +d++g +W+++l+ r ++ r    ++l++ W +Fv+++gL  +D v+F ld+++e   + +v
  Manes.10G121200.1.p 24 MDLTGFTWRFRLSTRSTG-RypkpVILQSSWHRFVEQKGLIPNDRVMFFLDHDEENGIRCRV 84
                         6899********753333.34777**************************998665455555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.55E-9678IPR015300DNA-binding pseudobarrel domain
PfamPF023623.8E-82483IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-72587IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
MEQIQLFTKQ LSRTDVLSAL SVPMDLTGFT WRFRLSTRST GRYPKPVILQ SSWHRFVEQK  60
GLIPNDRVMF FLDHDEENGI RCRVRAQRKI MRLFGYDFWV DVQDLHFYGV *
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.10G121200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021666945.13e-39uncharacterized protein LOC110655077 isoform X2
TrEMBLA0A2C9V5I73e-76A0A2C9V5I7_MANES; Uncharacterized protein
STRINGcassava4.1_027512m8e-70(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1390729