PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.10G121100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | B3 | ||||||||
Protein Properties | Length: 131aa MW: 15477.7 Da PI: 7.671 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 39.8 | 8.1e-13 | 7 | 104 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvF 82 f k+l++ dvl l++p + + ++ +g s++ d++g +W+++l+ r ++ r ++l++ W +Fv+++gL +D v+F Manes.10G121100.1.p 7 FTKQLSRTDVLYA--LSVPSNAL-QYfiipEGA--HSVEFEAVDLTGFTWRFRLSTRSTG-RypkpVILQSSWHRFVEQKGLIPNDRVMF 90 7899988888875..99**9999.674665333..678899999**********753333.34777************************ PP EE-SSSEE..EEEE CS B3 83 kldgrsefelvvkv 96 ld+++e + +v Manes.10G121100.1.p 91 FLDHDEENGIRCRV 104 **998665455555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.83E-12 | 3 | 98 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-13 | 4 | 107 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.37E-11 | 6 | 96 | No hit | No description |
SMART | SM01019 | 2.0E-5 | 7 | 110 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.8E-10 | 7 | 103 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 131 aa Download sequence Send to blast |
MEQIQLFTKQ LSRTDVLYAL SVPSNALQYF IIPEGAHSVE FEAVDLTGFT WRFRLSTRST 60 GRYPKPVILQ SSWHRFVEQK GLIPNDRVMF FLDHDEENGI RCRVRAQRKI MRLFGYDFWV 120 DVQDLHFYDV * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.10G121100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011007874.1 | 4e-52 | PREDICTED: uncharacterized protein LOC105113410 | ||||
TrEMBL | A0A2C9V741 | 2e-92 | A0A2C9V741_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_027512m | 3e-93 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13907 | 2 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G25730.1 | 3e-08 | ethylene response DNA binding factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Manes.10G121100.1.p |