PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.10G120700.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

Protein Properties

Length: 107aa MW: 12119 Da PI: 8.0585

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.10G120700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	36.1	1.1e-11	4	101	1	92
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFk 83 f k+l +v ++ l +p + +++ +++ + +++ + d +g+ W++ + ++k++++ v++kGW eF+ +L +g +++F+ Manes.10G120700.1.p 4 FSKIL--TSVDINKGLEIPHDRCDDVlaeLQITGQRMEILVADMQGNPWNFVC-FTKSGNKqlpkPVFKKGWLEFACHWNLAAGTTITFY 90 56666..444555569*****9999985566789*************.544444456779*********************9 PP E-.SS.SEE.. CS B3 84 ld.gr.sefel 92 + ++ +++++ Manes.10G120700.1.p 91 KEiDQaTGAQY 101 33233355555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd10017	1.01E-9	3	106	No hit	No description
Gene3D	G3DSA:2.40.330.10	1.7E-10	3	94	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.31E-10	3	91	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	3.5E-9	4	101	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 107 aa Download sequence Send to blast
MEIFSKILTS VDINKGLEIP HDRCDDVLAE LQITGQRMEI LVADMQGNPW NFVCFTKSGN 60 KQLPKPVFKK GWLEFACHWN LAAGTTITFY KEIDQATGAQ YKIRVR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.10G120700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021625663.1	2e-70	uncharacterized protein LOC110624707
TrEMBL	A0A2C9V5I3	1e-74	A0A2C9V5I3_MANES; Uncharacterized protein
STRING	cassava4.1_022215m	9e-75	(Manihot esculenta)

Link Out ? help Back to Top
Phytozome	Manes.10G120700.1.p